Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n01
(173 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ181928-1|ABA19229.1| 540|Homo sapiens CARDIF protein. 30 1.2
DQ174270-1|AAZ80417.1| 540|Homo sapiens mitochondrial anti-vira... 30 1.2
DQ167126-1|ABA54890.1| 540|Homo sapiens virus-induced signaling... 30 1.2
BC044952-1|AAH44952.1| 540|Homo sapiens virus-induced signaling... 30 1.2
AL353194-3|CAI11041.1| 540|Homo sapiens novel protein protein. 30 1.2
AL109804-18|CAI18851.1| 540|Homo sapiens novel protein protein. 30 1.2
AB232371-1|BAE79738.1| 540|Homo sapiens Ips-1 protein. 30 1.2
AB097003-1|BAC77356.1| 540|Homo sapiens putative NFkB activatin... 30 1.2
AB033097-1|BAA86585.1| 542|Homo sapiens KIAA1271 protein protein. 30 1.2
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 27 8.2
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 27 8.2
AF267071-1|AAF78618.1| 31|Homo sapiens immunoglobulin A heavy ... 27 8.2
AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein. 27 8.2
>DQ181928-1|ABA19229.1| 540|Homo sapiens CARDIF protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 169 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 74
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>DQ174270-1|AAZ80417.1| 540|Homo sapiens mitochondrial anti-viral
signaling protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 169 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 74
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>DQ167126-1|ABA54890.1| 540|Homo sapiens virus-induced signaling
adapter protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 169 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 74
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>BC044952-1|AAH44952.1| 540|Homo sapiens virus-induced signaling
adapter protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 169 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 74
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AL353194-3|CAI11041.1| 540|Homo sapiens novel protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 169 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 74
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AL109804-18|CAI18851.1| 540|Homo sapiens novel protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 169 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 74
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AB232371-1|BAE79738.1| 540|Homo sapiens Ips-1 protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 169 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 74
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AB097003-1|BAC77356.1| 540|Homo sapiens putative NFkB activating
protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 169 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 74
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AB033097-1|BAA86585.1| 542|Homo sapiens KIAA1271 protein protein.
Length = 542
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 169 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 74
TVALK+P P++ VP+ + S K +VP+
Sbjct: 309 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 340
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -2
Query: 145 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLS 14
+PS++ P+S S S +S P+ + SS + ++T++P+ S
Sbjct: 178 SPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSSSSTSSPSTSS 221
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -2
Query: 145 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLS 14
+PS++ P+S S S +S P+ + SS + ++T++P+ S
Sbjct: 179 SPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSSSSTSSPSTSS 222
>AF267071-1|AAF78618.1| 31|Homo sapiens immunoglobulin A heavy
chain protein.
Length = 31
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 80 SGQTTIFYKKSPQHYCGSNTFK 15
S T ++Y PQ YCG+ FK
Sbjct: 1 SEDTAVYYCARPQAYCGAECFK 22
>AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein.
Length = 708
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -2
Query: 136 TTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 26
++ Y P+ + KK+ + ++RS K RR+++++P
Sbjct: 220 SSSYSPSPVKKKKKKSSKKHKRRRSFSKKRRHSSSSP 256
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,260,839
Number of Sequences: 237096
Number of extensions: 337358
Number of successful extensions: 1114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 76,859,062
effective HSP length: 37
effective length of database: 68,086,510
effective search space used: 1361730200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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