Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n01
(173 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 0.58
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 29 0.58
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 27 1.3
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 27 1.3
Z79759-1|CAB02138.2| 841|Caenorhabditis elegans Hypothetical pr... 27 2.3
AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription... 27 2.3
AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related ... 27 2.3
AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein. 27 2.3
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 26 4.1
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 25 5.4
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 25 5.4
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 25 5.4
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 25 5.4
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p... 25 7.2
Z35597-2|CAA84649.2| 254|Caenorhabditis elegans Hypothetical pr... 25 7.2
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein. 25 7.2
AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical ... 25 7.2
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ... 25 7.2
Z66513-7|CAA91336.2| 289|Caenorhabditis elegans Hypothetical pr... 25 9.5
Y08815-1|CAA70049.1| 289|Caenorhabditis elegans TFIIE-beta prot... 25 9.5
U39678-7|AAK39210.1| 193|Caenorhabditis elegans Hypothetical pr... 25 9.5
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 0.58
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 163 ALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLS 14
+L V ST + TS SK + VP++ S+ N +T + TLLS
Sbjct: 1387 SLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTSSTPTNPTGSTESSTLLS 1436
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.7 bits (61), Expect = 0.58
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 69 CLAGTEFFLFLLPLIEVGTYSVV 137
C AG FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 166 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 26
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 493 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 537
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 166 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 26
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 452 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 496
>Z79759-1|CAB02138.2| 841|Caenorhabditis elegans Hypothetical
protein ZK858.1 protein.
Length = 841
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 142 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKN 50
P + Y + + S K +N+ P +QR SI+N
Sbjct: 615 PPPSRYAAGTAAPSHKHRNAHPQRQRPSIRN 645
>AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription
factor RUN protein.
Length = 301
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 160 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 20
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related
protein 1 protein.
Length = 301
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 160 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 20
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein.
Length = 301
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 160 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 20
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 145 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRN 41
AP++TE + KK K S K+ +S KN++N
Sbjct: 206 APASTESKKSKKIKKKKNKKSKDKKKSNSRKNKKN 240
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 145 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 23
AP+TT PT+ + + +VP ++ TT PT
Sbjct: 195 APTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPT 235
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 172 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLS 14
+TVA +L + V T + S + + P ++++++KNRR + P +LS
Sbjct: 1622 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRG--SIPDVLS 1672
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 172 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLS 14
+TVA +L + V T + S + + P ++++++KNRR + P +LS
Sbjct: 1656 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRG--SIPDVLS 1706
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 172 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLS 14
+TVA +L + V T + S + + P ++++++KNRR + P +LS
Sbjct: 1767 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRG--SIPDVLS 1817
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 172 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLS 14
+TVA +L + V T + S + + P ++++++KNRR + P +LS
Sbjct: 1686 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRG--SIPDVLS 1736
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 15 LKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEVGTYSVVDG 143
++ V A +L FF G FF+FL+P++ + + +V G
Sbjct: 58 IQIVNAIYILYFFFTLFMAFFGATFFVFLIPVLLI-VFPLVTG 99
>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 39 VLRRFFIE--DRCLAGTEFFLFLLPLIEVGTY 128
V+R+F +E + L+ F LF+LPLI+ Y
Sbjct: 661 VIRKFAVEKLNEQLSPVTFHLFILPLIQALKY 692
>Z35597-2|CAA84649.2| 254|Caenorhabditis elegans Hypothetical
protein C36E8.2 protein.
Length = 254
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 172 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIK 53
K+V K PST+ SIS RK + QR IK
Sbjct: 13 KSVRRKSATTPSTSSSSRPSISSQGNRKPILSVNQRQIIK 52
>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
Length = 1167
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 39 VLRRFFIE--DRCLAGTEFFLFLLPLIEVGTY 128
V+R+F +E + L+ F LF+LPLI+ Y
Sbjct: 682 VIRKFAVEKLNEQLSPVTFHLFILPLIQALKY 713
>AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical
protein Y50E8A.10 protein.
Length = 209
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/40 (22%), Positives = 24/40 (60%)
Frame = -2
Query: 151 PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTA 32
P++ + + T++ +K+K S + ++S+ KN++ +A
Sbjct: 49 PISDAIPDSTRTALDKEEKKKRSKDSSKKSNKKNKKKKSA 88
>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 39 VLRRFFIE--DRCLAGTEFFLFLLPLIEVGTY 128
V+R+F +E + L+ F LF+LPLI+ Y
Sbjct: 661 VIRKFAVEKLNEQLSPVTFHLFILPLIQALKY 692
>Z66513-7|CAA91336.2| 289|Caenorhabditis elegans Hypothetical
protein F54D5.11 protein.
Length = 289
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 157 KLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLS 14
K AP++ + + +KK+K+S PA+ S + + N+ + LS
Sbjct: 25 KPTTAPNSHTTYSSEAAKAKKKKSSGPAQNLSKLPDFNNSVSNANALS 72
>Y08815-1|CAA70049.1| 289|Caenorhabditis elegans TFIIE-beta protein
protein.
Length = 289
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 157 KLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLS 14
K AP++ + + +KK+K+S PA+ S + + N+ + LS
Sbjct: 25 KPTTAPNSHTTYSSEAAKAKKKKSSGPAQNLSKLPDFNNSVSNANALS 72
>U39678-7|AAK39210.1| 193|Caenorhabditis elegans Hypothetical
protein C39D10.5 protein.
Length = 193
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 151 PVAPSTTEYVPTS-ISGSKKRKNSVPAK 71
P S+T+ P++ ++GS+KRK+S P K
Sbjct: 72 PEVVSSTQPDPSAQLTGSRKRKSSSPKK 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,916,364
Number of Sequences: 27780
Number of extensions: 58892
Number of successful extensions: 250
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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