Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17n01
         (173 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   1.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   3.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   5.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   5.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   5.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    18   9.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 72  LAGTEFFLFLLPLIEVGTYSVVDGATGN 155
           +A T FFLFLL      T +++ G  GN
Sbjct: 283 VAFTIFFLFLLAWTPYATVALI-GVYGN 309


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 72  LAGTEFFLFLLPLIEVGTYSVVDGATGN 155
           +A T FFLFLL      T +++ G  GN
Sbjct: 283 VAFTIFFLFLLAWTPYATVALI-GVYGN 309


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 62  FYKKSPQHYCGS 27
           FYK+ PQ  C +
Sbjct: 580 FYKRRPQRACST 591


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 141 RLLQNTCPLRLAAARKEKTQF 79
           R+ +N   + LAA +K+K  F
Sbjct: 439 RVNENYKTVNLAAEKKDKNSF 459


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 112 ISGSKKRKNSVP 77
           + GS+KRK +VP
Sbjct: 194 LEGSQKRKFNVP 205


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 112 ISGSKKRKNSVP 77
           + GS+KRK +VP
Sbjct: 194 LEGSQKRKFNVP 205


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 141 RLLQNTCPLRLAAARKEKTQF 79
           R+ +N   + LAA +K+K  F
Sbjct: 439 RVNENYKTVNLAAEKKDKNSF 459


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 99   LLPLIEVGTYSVVDGATGNL 158
            LLP I V   + V G  GN+
Sbjct: 1852 LLPPISVAETTFVGGNQGNV 1871


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 99   LLPLIEVGTYSVVDGATGNL 158
            LLP I V   + V G  GN+
Sbjct: 1848 LLPPISVAETTFVGGNQGNV 1867


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 99  LLPLIEVGTYSVVDGATGNLSATV 170
           +LP+  +     V G  GN+S  V
Sbjct: 53  VLPITVIYAVIFVTGLVGNVSTCV 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,122
Number of Sequences: 438
Number of extensions: 586
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 37
effective length of database: 130,137
effective search space used:  2602740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)