Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17m23
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 29 0.55
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 1.7
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 2.2
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 27 2.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 2.9
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 26 2.9
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 2.9
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 26 3.9
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 3.9
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 26 3.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 5.1
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 5.1
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 6.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 6.8
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 6.8
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.8
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 25 9.0
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 25 9.0
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 25 9.0
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 25 9.0
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 25 9.0
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 28.7 bits (61), Expect = 0.55
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 332 VSEVKVKTEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSDA 210
VS K P+ VPST + S P+PS+ ++ EE D+
Sbjct: 187 VSSDPKKYIPETVPSTPQPASSLPIPSSPPAALETEENVDS 227
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 341 PDPVSEVKVKTEPDVVPSTSEYRSPSPVP 255
P V E K +EP+ PS R P+PVP
Sbjct: 569 PSVVREEKNYSEPNASPSVIPPRVPTPVP 597
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = -2
Query: 320 KVKTEPDVVPSTSEYRSPSPV------PSTSKQEIKPEELSDATDSDRVKTDADTEELRR 159
K ++EPD +PS+ S P P+T + P ++ + S+ +K E+LR+
Sbjct: 674 KPRSEPDAIPSSKSMHSNKPFEEKSEKPTTKRLVTNPSNVNASWHSNMLKRQ---EDLRK 730
Query: 158 RR 153
++
Sbjct: 731 KK 732
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -2
Query: 320 KVKTEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSDATDSDRVKT 186
+++T P V P+TS ++PS + T Q+++ +++S + D+ T
Sbjct: 95 ELQTSPIVSPTTSPKQTPS-INVTEPQDLELDKVSQDHEKDQSNT 138
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 166 NSSVSASVLTLSESVASDNSSGLISCLLVDGTGDGDLYSDVLGTTSGSVFTLTSETGS 339
+SSV+ASV ++ S + + + + S +VD S V+ TS SV +SE S
Sbjct: 86 SSSVAASVTPVASSSVAASVTPVSSSAVVDSATSAAASSSVI-PTSSSVVASSSEVAS 142
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 166 NSSVSASVLTLSESVASDNSSGLISCLLVDGTGDGDL--YSDVLGTTSGSVFTLTSETGS 339
+SSV+ASV +S S D+++ + V T + S+V +T+ S + TGS
Sbjct: 98 SSSVAASVTPVSSSAVVDSATSAAASSSVIPTSSSVVASSSEVASSTTSSAAASATSTGS 157
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 329 SEVKV-KTEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSDATDSDRV 192
S++++ K+ S S +PSP P + P ++S++ DR+
Sbjct: 62 SKIQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISESISGDRL 108
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 26.2 bits (55), Expect = 2.9
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +3
Query: 99 LKHNNTKYASFIQGKLLQSTSSQLLGVGVSLDS--IG-ISCVGQLLRFDFLFAGRRHRRW 269
L+HNN KL S+SS L V +++D +G + C+ Q+ + +
Sbjct: 627 LEHNNVSIPDDFDSKLKLSSSSGLTCVRIAIDGQFVGFLGCMDQVRPDSYQTVSALKQLG 686
Query: 270 RPVLRCTGD 296
+ V TGD
Sbjct: 687 KKVCLLTGD 695
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 314 KTEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEELR 162
KT P+V PS EY PV +T+ ++ + + D+ + D E++R
Sbjct: 442 KTLPEVNPSMEEYNPKMPVTATTLSTLQ-QFVGHIKDAFKKIGDCRQEQMR 491
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 323 VKVKTEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEEL 165
+ + EP V + +Y S K E + EELS A D D V ++ EEL
Sbjct: 137 LNAEAEPSDVNAV-DYIIQSAKDKVQKLEAEIEELSTADDVDDVLLESKYEEL 188
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 311 TEPDVVPSTSEYRSPSPVPSTSKQEI-KPEELSDATDSDR 195
TEP V P TS + P+P + I P+ LS + D+
Sbjct: 187 TEPSVEPPTSSFPIQPPLPPSRSISISNPQSLSFPSSFDQ 226
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 332 VSEVKVKTEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSDATDS 201
+ E+ ++ + P T + +P P T+ QE EE +DA S
Sbjct: 577 LKEISQFSKTTIKPETPLTPTTTPTPRTAAQEDPAEETTDALAS 620
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 353 TETQPDPVSEVKVKTEPDVVPSTSEYRSPSPVPSTS 246
T T P P S T P ++S S SP+PSTS
Sbjct: 302 TPTVP-PTSTSSTSTPPPPASTSSTGTSSSPLPSTS 336
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 281 EYRSPSPVPSTSKQEIKPEELSDA 210
E+ SP V STS + K ELSD+
Sbjct: 2 EHPSPDSVSSTSSSDHKKAELSDS 25
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = -2
Query: 293 PSTSEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEELRRRR 153
PS S P P T+ PE + D + TEE RR
Sbjct: 596 PSFSSEHKPQPSLKTTTDVSSPETKQNIADIRKTTLTDQTEEFTERR 642
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 293 PSTSEYRSPSPVPSTSKQEIKPEELSDATDS 201
PS S + P + +K +KP+ + D TDS
Sbjct: 206 PSNSPVPNIPPASNDTKTSLKPDIIKDFTDS 236
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 356 QTETQPDPVSEVKVKTEPDVVPSTSEYRSPSP-VPSTSKQ 240
+ E+ P V+ + + V PS+ Y SP P +P Q
Sbjct: 220 RVESSPASVNAAAIVRKSAVTPSSDPYNSPPPSIPLLGSQ 259
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -2
Query: 287 TSEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEE 168
+SE +SPSPV ++ KQ E +D D D+ D TEE
Sbjct: 1469 SSEKKSPSPVFTSVKQ--TAENDADNED-DKTDMDDQTEE 1505
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 353 TETQPDPVSEVKVKTEPDVVPSTSEYRSPSPVPSTSKQEIKP 228
T T P + V T VVP T+ + S VP+T++ I P
Sbjct: 130 TTTVVPPTTHVNTTT---VVPPTTHANTTSFVPTTTESSIHP 168
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 311 TEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSD 213
T+ D VP + SPSP+ S+ IKP +LS+
Sbjct: 408 TKNDNVPLVTH--SPSPMHSSFTVSIKPTQLSE 438
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 250 PANRKSNLRSCPTQLIPIESRLTPTPRS*ED 158
P +K + S P + +P+ L PTP S E+
Sbjct: 154 PVPKKPSKPSKPRKKVPVSHPLPPTPPSREE 184
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 375 ILSRVSDXCRVLLHEENXSVQHGLDLX*QL*SSLDVPAFVTLHTLQL 515
++++V + L+ EEN ++ + L SS+D P TL L L
Sbjct: 16 LINKVQESRLELVDEENNNLYETITTANDLFSSVDAPTEATLDALLL 62
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 314 KTEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEELRR 159
+T PDVVPS+ + S V +S K E + + +++ E LRR
Sbjct: 891 ETAPDVVPSSYPPAAESNVSVSSDTSTKDVEKQEPSSAEQ-PAQGIAESLRR 941
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -2
Query: 296 VPSTSEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEELRRRRLQ 147
+P+ EY T I PE+ SDA SD VK + E RRLQ
Sbjct: 238 LPNGVEYNGQMVSVGTFPIGIDPEKFSDALKSDVVKDRIASIE---RRLQ 284
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 356 QTETQPDPVSEVKVKTEPDVVPST-SEYRSPSPVPSTSKQEIKPEELSDATDSDRVK 189
Q + Q D VSE+ V E P+T +E + S ++K+E + ++ + R K
Sbjct: 14 QLDYQVDLVSEISVSDEESAQPTTITENFTASQNNDSAKREKRKKQRQKQKERKRAK 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,039
Number of Sequences: 5004
Number of extensions: 31033
Number of successful extensions: 141
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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