Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m23
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 505 VWRVTNAGTSRLDYSC 458
           +WRV  A +SR++Y C
Sbjct: 103 LWRVCVAISSRMEYEC 118


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 284 SEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEELR 162
           S   SP+ +P  ++ EIK E +   T      T  DT E++
Sbjct: 123 SSQASPTSIPYATRAEIKTESIQPET------TKVDTREVQ 157


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 249 GRRHRRWRPVLRC 287
           GR  RR++P  RC
Sbjct: 411 GRVRRRYQPAFRC 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,997
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)