Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m13
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    40   6e-04
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    37   0.004
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    29   1.1  
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    28   2.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.6  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   4.5  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    27   4.5  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    27   4.5  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    26   6.0  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   7.9  

>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 2/230 (0%)
 Frame = -1

Query: 855 NSNSRAASHRIQLYK-FFQKMDFHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLAT 679
           ++N+    HR+ + + F+  ++ +     YRGYG ST   P+E G+  D+    ++L+  
Sbjct: 96  HANAGNMGHRLPIARVFYSALNMNVFIISYRGYGKSTG-SPSEAGLKIDSQTALEYLM-- 152

Query: 678 ADKGGETPPVFVWGHSLGTAISAHLLG-NLEQLSLRVLGRALPPPRGLVLEAPFNNLADE 502
                    + V+G S+G A++  L   N +++S             L+LE  F ++ D 
Sbjct: 153 EHPICSKTKIVVYGQSIGGAVAIALTAKNQDRIS------------ALILENTFTSIKDM 200

Query: 501 VAKHPLSKLVTWLPYYEATFVEPFRVHPEQRFQSERHLGGAPGLPVLILHARDDVVVPFA 322
           +         T  P Y  + +  F     + + S+  +     LPVL L    D +VP  
Sbjct: 201 IP--------TVFP-YGGSIISRFCT---EIWSSQDEIRKIKKLPVLFLSGEKDEIVPPP 248

Query: 321 VGLQLYKSILASRSQGGATVALHAYEKSENLGHKWICEAKDLTQVIGDFV 172
                 + +L     G A    H++ K     H   C      QVI DF+
Sbjct: 249 ------QMVLLFGLCGSAKKKFHSFPKCT---HNDTCLGDGYFQVIADFL 289


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 822 QLYKFFQKMDFHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETP-PVF 646
           + ++   + +     FD RG+G S    P ++G      +V+  L     +  +T  P+F
Sbjct: 35  EFFEALNERNIEVYTFDQRGFGHSRKGGPKKQGCTGGWSLVFPDLDYQILRASDTELPLF 94

Query: 645 VWGHSLGTAIS 613
           +WGHS+G  ++
Sbjct: 95  LWGHSMGGGLA 105


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 618 ISAHLLGNLEQLSLRVLGRALPPPRGLVLEAPFNNLADEVAKHPLSKLV 472
           ++ H L N E + L      LPP +G  +   F N+  E A+  LSK +
Sbjct: 80  LAKHQLLNKETIKLPSFNFRLPPLQGKTISEHFYNIGLEFAEPHLSKAI 128


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 696 DWLLATADKGGETPPVFVWGHSLGTAISAHLLGNLEQL 583
           DWL + +D     P +FV GHS+G + S   L   E+L
Sbjct: 112 DWLSSISDIS-TMPNIFVGGHSIGGSDSVRALYQEEKL 148


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 726 GVVEDALVVYDWLLATADKGGETPPVFVWGHSLGTAISAHLLGNLEQLSL 577
           G VEDA+  Y +   TA      P  F+  H + TA+S   + ++   SL
Sbjct: 297 GYVEDAVGYYSFDFTTAGDTSVEPLFFLLPHQVDTAVSGTKVTSIVLASL 346


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 698 TTGFWPPQTRVGRRRLYSYGDTLWERRYQRTSSATWSS 585
           T G    + ++G+  +YS      +R YQ+ +S +WSS
Sbjct: 298 TAGLTFLEDKIGKEDIYSETRESLQRIYQKLTSNSWSS 335


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = -2

Query: 737 RLRRASWKTHWSSTTGFWPPQTRVGRRRLYSYGDTLWERRYQRTSSATWSSSRFGSWAAP 558
           +L    WK   + +  F+PP+T  G + LY+  D +           TW +    S   P
Sbjct: 6   KLLHPDWKEKVTYSYEFFPPKTSTGVQNLYNRIDRMKTWGRPMFVDVTWGAGGTSSELTP 65


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 172 NEISYNLGQVFGLAYPLVAQVLGF 243
           N     LGQ FG+ Y L+A  +GF
Sbjct: 645 NSAGERLGQAFGVVYTLLAIFIGF 668


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
 Frame = +1

Query: 616 YRRSQRVSPYEY-RRRLPTLVCGGQKPVVDDQCVFHDAL-----LSRTQVRGIA-ISSVI 774
           Y R   +  ++Y   + P LV GG+KP+   + +F   +     LS +    +A I +++
Sbjct: 118 YFRCSMIVAHKYILEKYPELVSGGKKPLKGLKLIFDGNVPTGGGLSSSAAFCVASILAIL 177

Query: 775 KSNGVEIHFLKELIQL 822
           K+NG+     ++L+++
Sbjct: 178 KANGINTITKEDLVKI 193


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 204 WPRISTC--GPGSRISRRHVTRRWRHLASAK 290
           W  +S C  G  +R + RH  +RW +L   K
Sbjct: 727 WHDVSMCIIGQPARDAARHFVQRWNYLIQCK 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,459,004
Number of Sequences: 5004
Number of extensions: 68353
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)