Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17m13
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 42 6e-04
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 40 0.003
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 39 0.004
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 38 0.010
12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776 38 0.014
01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157... 33 0.22
04_03_0160 + 12099120-12099753,12099879-12099958 33 0.29
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631... 32 0.51
01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849... 32 0.51
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748... 32 0.68
01_01_1077 + 8485655-8486134,8486423-8486554,8487725-8487966,848... 31 1.2
10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800 30 2.1
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35... 30 2.1
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092... 30 2.1
03_01_0113 + 905535-905840,906601-906812,906929-907196,907314-90... 30 2.1
02_05_0733 + 31309835-31310434,31314138-31314254,31314364-313148... 30 2.7
01_03_0053 + 12050631-12051620 29 3.6
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350... 29 6.3
10_08_0005 + 14030414-14030519,14030612-14030921,14031012-140312... 29 6.3
08_02_1406 - 26854845-26855606 29 6.3
12_02_0285 - 16828173-16828661 28 8.4
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 28 8.4
04_04_0574 + 26338567-26338819,26338918-26338989,26339077-263391... 28 8.4
03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059 28 8.4
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 41.9 bits (94), Expect = 6e-04
Identities = 28/76 (36%), Positives = 40/76 (52%)
Frame = -1
Query: 783 IAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETPPVFVWGHSLGTAISAHL 604
+++DY GYG ST P+E D VYD L T G E + ++G S+G+ + HL
Sbjct: 103 MSYDYSGYGASTGK-PSEYNTYCDIEAVYDCL--TKVYGIEPEDLILYGQSVGSGPTLHL 159
Query: 603 LGNLEQLSLRVLGRAL 556
LE+L VL A+
Sbjct: 160 ASRLEKLRGVVLHSAI 175
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 39.9 bits (89), Expect = 0.003
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = -1
Query: 822 QLYKFFQKMDFHT----IAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETP 655
QLY F ++ + + +DY GYG ST P+EE D VY L + G
Sbjct: 88 QLYDLFVQLKVNLKVNLMGYDYSGYGASTGK-PSEENTYADIEAVYQCL--ETEYGISQE 144
Query: 654 PVFVWGHSLGTAISAHLLGNLEQLSLRVLGRAL 556
+ ++G S+G+ + HL L +L VL A+
Sbjct: 145 DLILYGQSVGSGPTLHLASRLPRLRGVVLHSAI 177
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/98 (25%), Positives = 46/98 (46%)
Frame = -1
Query: 861 HGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLA 682
HGN+ +++ L+ F + + + +DY GYG S+ P+E D Y L+
Sbjct: 64 HGNAADLGHLYQLFLHLSFN-LRVNVLGYDYSGYGQSSGK-PSEHNTYADIEAAYKCLI- 120
Query: 681 TADKGGETPPVFVWGHSLGTAISAHLLGNLEQLSLRVL 568
+ G + + ++G S+G+ + L L +L VL
Sbjct: 121 -ENFGAKEEEIILYGQSVGSGPTVDLASRLHRLRAVVL 157
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 37.9 bits (84), Expect = 0.010
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = -1
Query: 822 QLYKFFQKMDFHT----IAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETP 655
Q+Y+ F ++ H + +DY GYG S+ P+E+ D Y L+ T G
Sbjct: 92 QMYELFVELSSHLNVNLMGYDYSGYGQSSGK-PSEQNTYSDIEAAYRCLVET--YGATEE 148
Query: 654 PVFVWGHSLGTAISAHLLGNLEQLSLRVL 568
+ ++G S+G+ + L L L VL
Sbjct: 149 NIILYGQSVGSGPTLDLASRLPHLRAVVL 177
>12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776
Length = 320
Score = 37.5 bits (83), Expect = 0.014
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 792 FHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETPPVFVWGHSLGTAIS 613
F +A D RGYGDST P + +V D L+A D P V V GH LG ++
Sbjct: 56 FRALAPDLRGYGDST--VPDDPAAYTVFHIVGD-LVALLDHLA-LPKVMVVGHDLGAQVA 111
Query: 612 AHLLGNLEQLSLRVLGRALP-PPRG 541
HL + L V+ +P PRG
Sbjct: 112 WHLCLFRPDMLLAVVNLGVPFFPRG 136
>01_01_0185 -
1570942-1571178,1571525-1571656,1571737-1571816,
1571919-1572048,1572136-1572268,1572376-1572497,
1572612-1572749,1572898-1572918,1573493-1573678,
1574576-1574713,1575068-1575532
Length = 593
Score = 33.5 bits (73), Expect = 0.22
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = -1
Query: 717 EDALVVYDWLLATADKGGETPPVFVWGHSLGTAISAHLLGN--LEQLSLRVLGRAL--PP 550
++ L + W++A A +G +F W H L + A GN L L++L R L P
Sbjct: 304 QEKLPIIVWVIAQASQGDLVTGMFCWAHFLFPTLCAKPSGNPQTRDLVLQLLERILSAPK 363
Query: 549 PRGLVL 532
RG++L
Sbjct: 364 ARGILL 369
>04_03_0160 + 12099120-12099753,12099879-12099958
Length = 237
Score = 33.1 bits (72), Expect = 0.29
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 314 SPTAKGTTTSSLACSMSTGSPGAPPRCLSDWNLCS 418
SPT+ +++S+L + + GSP AP + W +CS
Sbjct: 176 SPTSATSSSSTLGGTSNPGSPVAPSSFMDSWKICS 210
>03_03_0016 -
13761007-13761489,13761929-13762096,13763086-13763130,
13763380-13763447,13763532-13763586,13763659-13763814,
13763904-13764002,13764792-13764872,13765513-13765636,
13765938-13766032,13766434-13766560,13766768-13766871,
13767278-13767359,13768012-13768049
Length = 574
Score = 32.3 bits (70), Expect = 0.51
Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 8/142 (5%)
Frame = -1
Query: 864 CHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGY--GDSTNLCPTEEGVVEDALVVYDW 691
CHGNS RA + + + T+ F G G+ L E ED V +
Sbjct: 71 CHGNSGCRADASEAAIILLPSNITVFTLDFSGSGLSEGEHVTLGWNER---EDLKAVVNH 127
Query: 690 LLATADKGGETPPVFVWGHSLGTAISAHLLGNLEQLSLRVLGRALPPPRGLVLEAPFNNL 511
L G + +WG S+G S + G P G+VL++PF+NL
Sbjct: 128 LRTD----GNISCIGLWGRSMGAVTSL------------MYGAEDPSIAGMVLDSPFSNL 171
Query: 510 AD------EVAKHPLSKLVTWL 463
D + K+PL K L
Sbjct: 172 VDLMMELVDTYKYPLPKFTVKL 193
>01_01_1078 +
8489872-8490168,8490280-8490462,8490667-8490908,
8490988-8491240
Length = 324
Score = 32.3 bits (70), Expect = 0.51
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = -1
Query: 792 FHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETPPVFVWGHSLGTAIS 613
F +A D RGYGDS P +V D + AD G P VFV GH G ++
Sbjct: 57 FRAVAPDLRGYGDSD--APQGRDSYTVLHLVGDLVALIADLG--RPQVFVAGHDWGAVVA 112
Query: 612 AHL 604
L
Sbjct: 113 WQL 115
>01_06_0322 +
28472680-28473053,28474434-28474470,28474578-28474814,
28474891-28474938,28475263-28475661
Length = 364
Score = 31.9 bits (69), Expect = 0.68
Identities = 23/93 (24%), Positives = 39/93 (41%)
Frame = -1
Query: 861 HGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLA 682
HGN+ + + + +++ + +DY GYG ST PTE D Y+ L
Sbjct: 99 HGNAADLGQMYGL-FVELSRRLRINLFGYDYSGYGRSTGK-PTECNTYADIEAAYNCL-- 154
Query: 681 TADKGGETPPVFVWGHSLGTAISAHLLGNLEQL 583
G + ++G S+G+ + L L L
Sbjct: 155 KEKYGVADEDIILYGQSVGSGPTIDLASRLPNL 187
>01_01_1077 +
8485655-8486134,8486423-8486554,8487725-8487966,
8488254-8488500
Length = 366
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = -1
Query: 792 FHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETPPVFVWGHSLGTAIS 613
F +A D RGYGDS P +V D + AD G P VFV H G A++
Sbjct: 57 FRAVAPDLRGYGDSD--APPGRDSYTVLHLVGDLVALIADVG--QPRVFVAAHDWGAAVA 112
Query: 612 AHL 604
L
Sbjct: 113 WQL 115
>10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800
Length = 332
Score = 30.3 bits (65), Expect = 2.1
Identities = 31/105 (29%), Positives = 47/105 (44%)
Frame = -1
Query: 861 HGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLA 682
HG + SR S R + +++ + +AFD GYG+S P V+ A + +
Sbjct: 65 HGFTGSRLDSLRASP-EVAEELGVYMVAFDRAGYGESD---PNPNRTVKSAALD---MAE 117
Query: 681 TADKGGETPPVFVWGHSLGTAISAHLLGNLEQLSLRVLGRALPPP 547
AD G +V G SLG S + G L + R+ G A+ P
Sbjct: 118 LADALGLGDKFYVVGVSLG---SHAVWGALRYIPERIAGAAMMAP 159
>08_01_0051 -
355392-355450,355507-355634,356271-356425,356883-357012,
357600-357739,358384-358552,360286-360557
Length = 350
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 636 HSLGTAISAHLLGNLEQLSLRVLGRALPPPRGLVLEAPFNNL 511
H + +A A GNL +LS+ +L L P G++L FN +
Sbjct: 242 HVMDSAKQATKSGNLNELSMVLLNNILSVPLGIILVLGFNEV 283
>03_06_0541 -
34607071-34607353,34608167-34608399,34609093-34609275,
34609357-34609659
Length = 333
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = -1
Query: 792 FHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETPPVFVWGHSLGTAIS 613
+ +A D RGYG +T P E +V D L+A D E P VFV GH G +S
Sbjct: 59 YRCVAPDLRGYGGTT--APPEHTSYTIFHLVGD-LVALLD-ALELPQVFVVGHDWGAIVS 114
Query: 612 AHL 604
+L
Sbjct: 115 WNL 117
>03_01_0113 +
905535-905840,906601-906812,906929-907196,907314-907595
Length = 355
Score = 30.3 bits (65), Expect = 2.1
Identities = 31/105 (29%), Positives = 48/105 (45%)
Frame = -1
Query: 861 HGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLA 682
HG + SR S R + +++ + + FD GYG+S P V+ A + + L
Sbjct: 88 HGFTGSRLDSVRPSP-EVAEELGVYMVGFDRAGYGESD---PNPNRSVKSAALDVEEL-- 141
Query: 681 TADKGGETPPVFVWGHSLGTAISAHLLGNLEQLSLRVLGRALPPP 547
AD G P +V G SLG + G L+ + R+ G A+ P
Sbjct: 142 -ADALGLGPKFYVIGISLGCHA---VWGALKYIPERIAGAAMMAP 182
>02_05_0733 +
31309835-31310434,31314138-31314254,31314364-31314806,
31316831-31317137
Length = 488
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 514 VVEGRLQHEPAGRRQGAAQDPKRELLQVAEEVR*YRRSQRVSPYEY-RRRLPTLV 675
V EGRL H GRR + L V E Y +R PY++ RR P V
Sbjct: 269 VFEGRLPHYVEGRRLPRHVEEMHHLRHVEERRLPYDHEERRLPYDHEERRRPRYV 323
>01_03_0053 + 12050631-12051620
Length = 329
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -1
Query: 807 FQKMDFHTIAFDYRGYGDSTNLCPTEEGVVEDAL-VVYDWLLATADKGGETPP---VFVW 640
F K F A D++G+G S L +G + D + V+ D A A + PP F++
Sbjct: 82 FAKAGFAVAAVDHQGHGFSEGL----QGHIPDIVPVLEDCEAAFAPFRADYPPPLPCFLY 137
Query: 639 GHSLGTAIS 613
G SLG AI+
Sbjct: 138 GESLGGAIA 146
>11_04_0281 +
15733505-15733647,15734366-15734443,15734835-15735077,
15735868-15736012,15736234-15736293,15736376-15736471,
15736651-15737067,15737824-15737964,15738043-15738213,
15738394-15738651,15738741-15738889,15739060-15739557,
15740147-15740420,15740631-15740696,15740891-15741057,
15741413-15741497,15741673-15741732
Length = 1016
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -2
Query: 851 QTRAPPLTEYSCISSFRKWISTPLLLITEDMAIPRTCVRLRRASWK 714
+TR PL+ YSC+ +F + P L+ EDM C R+AS K
Sbjct: 773 RTRGEPLSLYSCLDAFLR--EEP--LVPEDMWYCPRCKEQRQASKK 814
>10_08_0005 +
14030414-14030519,14030612-14030921,14031012-14031233,
14031326-14031565,14031727-14031804,14031841-14032036,
14032084-14032265,14032351-14032433,14032526-14032650,
14032762-14032840,14032924-14033092,14033171-14033231,
14033312-14033434,14033552-14033749,14033927-14033995,
14034244-14034320,14034475-14034562
Length = 801
Score = 28.7 bits (61), Expect = 6.3
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Frame = -1
Query: 861 HGNSNSRAASHRIQLYKFFQKMDFHTIAFDYR---GYG-DSTNLCPTEEGV--VEDALVV 700
HG +S + S + F + F+ + +YR G+G ++ P + G V+D L
Sbjct: 566 HGGPHSVSVSSYSKTSAFLASLGFNLLIVNYRGTPGFGEEALQSLPGKVGSQDVQDCLTA 625
Query: 699 YDWLLATADKGG--ETPPVFVWGHSLGTAISAHLLG 598
D+++ +GG + V V G S G ++ HL+G
Sbjct: 626 LDYVI----EGGLIDASKVAVIGISHGGFLTTHLIG 657
>08_02_1406 - 26854845-26855606
Length = 253
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +2
Query: 311 WSPTAKGTTTSSLACSMSTGSPGAPPRCLSDWNLCSGWTLKGSTKVA-S*YGSHVTSLDS 487
WS + S L + + G G PP C +C G G +A + G + L
Sbjct: 176 WSYQCQTCPDSELCLACALGRDGVPPCCCCGQCVCGGGCFVGCAGLAGNAMGHFIHELFR 235
Query: 488 GCFATS 505
GC S
Sbjct: 236 GCTGLS 241
>12_02_0285 - 16828173-16828661
Length = 162
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 602 SATWSSSRFGSWAAPCRRPAGSCWRRPS 519
+A+WS R+ CR+ G WRRP+
Sbjct: 69 AASWSRGRWWRRRPACRQGDGGDWRRPA 96
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 602 SATWSSSRFGSWAAPCRRPAGSCWRRPS 519
+A+WS R+ CR+ G WRRP+
Sbjct: 69 AASWSRGRWWRRRPACRQGDGGDWRRPA 96
>04_04_0574 +
26338567-26338819,26338918-26338989,26339077-26339135,
26339229-26339288,26339304-26339364,26339496-26339592,
26339684-26339750,26340123-26340311,26340404-26340639,
26340747-26340848,26340981-26341092
Length = 435
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 600 GNLEQLSLRVLGRALPPPRGLVLEAPFNNLA 508
GNL+ LSL+ LG+ + GL +++P LA
Sbjct: 211 GNLKALSLQALGQGVDMQLGLAIDSPKATLA 241
>03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059
Length = 338
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = -1
Query: 792 FHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETPPVFVWGHSLGTAIS 613
F +A D RGYGD T+ P E A V L+A D G VFV GH G I+
Sbjct: 63 FRCLAPDLRGYGD-TDAPPEIESY--SAFHVVGDLVALLDALG-LAKVFVVGHDWGAIIA 118
Query: 612 AHL 604
++
Sbjct: 119 WYM 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,935,607
Number of Sequences: 37544
Number of extensions: 557645
Number of successful extensions: 2063
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2063
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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