Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17m13
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical ... 155 3e-38
Z75712-10|CAB00039.2| 332|Caenorhabditis elegans Hypothetical p... 36 0.028
U13070-5|AAC46639.1| 629|Caenorhabditis elegans Dipeptidyl pept... 33 0.20
Z81493-7|CAE46664.1| 342|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z81493-6|CAB04038.1| 335|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z81493-8|CAB04043.1| 305|Caenorhabditis elegans Hypothetical pr... 31 1.4
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p... 29 4.3
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical pr... 29 4.3
U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical pr... 28 7.5
>AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical
protein Y97E10AL.2 protein.
Length = 345
Score = 155 bits (377), Expect = 3e-38
Identities = 83/232 (35%), Positives = 126/232 (54%), Gaps = 2/232 (0%)
Frame = -1
Query: 861 HGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLA 682
HGNS R HR+++Y ++H + FDYRGYGDS PTE+G+VED VY+WL
Sbjct: 120 HGNSFDRTFYHRVEMYNLLSDCNYHVVCFDYRGYGDSEG-TPTEKGIVEDTKTVYEWL-- 176
Query: 681 TADKGGETPPVFVWGHSLGTAISAHLLGNLEQLSLRVLGRALPPPRGLVLEAPFNNLADE 502
+ G+T PV VWGHS+GT +S L+ + L R PP GL+LE+PFNNL D
Sbjct: 177 -KENCGKT-PVIVWGHSMGTGVSCKLVQD--------LSREQQPPCGLILESPFNNLKDA 226
Query: 501 VAKHPLSKLVTWLPYY--EATFVEPFRVHPEQRFQSERHLGGAPGLPVLILHARDDVVVP 328
V HP+ + +W+ + + + P +S++ + P++ILHA DD ++P
Sbjct: 227 VTNHPIFTVFSWMNDFMVDHIIIRPLN-SVGLTMRSDKRI-RLVSCPIIILHAEDDKILP 284
Query: 327 FAVGLQLYKSILASRSQGGATVALHAYEKSENLGHKWICEAKDLTQVIGDFV 172
+G LY+ + + + + LGHK+IC +L ++I +FV
Sbjct: 285 VKLGRALYE----AAKDAERDIKIREFSSDYGLGHKFICRYPELPEIIEEFV 332
>Z75712-10|CAB00039.2| 332|Caenorhabditis elegans Hypothetical
protein K04G2.2 protein.
Length = 332
Score = 36.3 bits (80), Expect = 0.028
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = -1
Query: 822 QLYKFFQKMDFH----TIAFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLATADKGGETP 655
Q+ F + FH ++DY GYG ST P+E+ + D ++ L ++ G
Sbjct: 127 QMTSFLYGLGFHLNCNVFSYDYSGYGCSTGK-PSEKNLYADITAAFE--LLKSEFGVPKE 183
Query: 654 PVFVWGHSLGTAISAHLLGNLEQLSLRVL 568
+ ++G S+GT S L + E L+ VL
Sbjct: 184 KIILYGQSIGTVPSVD-LASREDLAALVL 211
>U13070-5|AAC46639.1| 629|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 4 protein.
Length = 629
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 369 PVLILHARDDVVVPFAVGLQLYKSILASRSQGGATVALHAYE 244
P+ LH R+D VVP + + +Y+ I AS G T AL ++
Sbjct: 548 PIAFLHGREDTVVPMSQSITMYEKIRAS----GVTTALMLFD 585
>Z81493-7|CAE46664.1| 342|Caenorhabditis elegans Hypothetical
protein F01D5.7b protein.
Length = 342
Score = 33.1 bits (72), Expect = 0.26
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = -1
Query: 780 AFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLAT-ADKGGETPPVFVWGHSLGTAISAHL 604
AFDY GYG S+ +E+ + D VY+ +L T DK + V G+S+GT + L
Sbjct: 157 AFDYSGYGFSSG-TQSEKNMYADVRAVYEHILKTRPDK-----KIVVIGYSIGTTAAVDL 210
Query: 603 LGNLEQLSLRVLGRALPPPRGLVLEAPFNN 514
+ R++G L P L NN
Sbjct: 211 AASNPD---RLVGVVLIAPLTSALRMFCNN 237
>Z81493-6|CAB04038.1| 335|Caenorhabditis elegans Hypothetical
protein F01D5.7a protein.
Length = 335
Score = 33.1 bits (72), Expect = 0.26
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = -1
Query: 780 AFDYRGYGDSTNLCPTEEGVVEDALVVYDWLLAT-ADKGGETPPVFVWGHSLGTAISAHL 604
AFDY GYG S+ +E+ + D VY+ +L T DK + V G+S+GT + L
Sbjct: 157 AFDYSGYGFSSG-TQSEKNMYADVRAVYEHILKTRPDK-----KIVVIGYSIGTTAAVDL 210
Query: 603 LGNLEQLSLRVLGRALPPPRGLVLEAPFNN 514
+ R++G L P L NN
Sbjct: 211 AASNPD---RLVGVVLIAPLTSALRMFCNN 237
>Z81493-8|CAB04043.1| 305|Caenorhabditis elegans Hypothetical
protein F01D5.8 protein.
Length = 305
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 780 AFDYRGYGDSTNLCPTEEGVVEDALVVYDWLL-ATADKGGETPPVFVWGHSLGTAISAHL 604
AFDY GYG S+ E+ V D VY+ +L DK + V G+S+GT + L
Sbjct: 114 AFDYSGYGFSSG-TQGEKNVYADVRAVYEKILEMRPDK-----KIVVMGYSIGTTAAVDL 167
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 594 LEQLSLRVLGRALPPPRGLVLEAPFNNLADEVAKHPLSK 478
LE+ SL+V+G G ++ NNL D V P+SK
Sbjct: 1893 LERYSLKVIGTGSGQQIGTRVDVRVNNLNDNVPSFPMSK 1931
>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
protein C53A5.2 protein.
Length = 1150
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 825 IQLYKFFQKMDFHTIAFDYRG 763
+QL +F ++DFHT A D RG
Sbjct: 354 VQLIDYFSQIDFHTNAIDTRG 374
>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
protein C53A5.2 protein.
Length = 1150
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 825 IQLYKFFQKMDFHTIAFDYRG 763
+QL +F ++DFHT A D RG
Sbjct: 354 VQLIDYFSQIDFHTNAIDTRG 374
>Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical
protein F07A11.6d protein.
Length = 567
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +2
Query: 284 REASIDLYNWSPTAKGTTTSSLACSMSTGSPGAPP 388
R +++ + SP+A GTT+ S + S+S+G P +PP
Sbjct: 303 RSSTMGNNSGSPSASGTTSPSTSSSISSG-PDSPP 336
>U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical
protein F07C3.3 protein.
Length = 791
Score = 28.3 bits (60), Expect = 7.5
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Frame = -1
Query: 831 HRIQLYKFFQKMDFHTIAFDYRGYGDST--NLCPTEEGVVEDALVV--YD--------WL 688
H + + K+D+H + + Y D++ NL P G +E+AL YD WL
Sbjct: 325 HMPRTVEVMAKLDYHYL-YGYTKVADNSMVNLAPILVGDMEEALKKPKYDKSGDFNINWL 383
Query: 687 LATADKGGETPPVFVW 640
L T DK T F+W
Sbjct: 384 LPTEDKMDPTKLNFLW 399
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,690,854
Number of Sequences: 27780
Number of extensions: 417066
Number of successful extensions: 1241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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