Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m13
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.68 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.7  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   6.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   6.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   6.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   6.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 477 LVTWLPYYEATFVEPFRVHPE 415
           +V WLP++    V PF  +P+
Sbjct: 382 IVCWLPFFVLALVRPFLKNPD 402


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 240 SENLGHKWICEAKDLTQVI 184
           SE L H WIC+ + +  V+
Sbjct: 162 SEALKHPWICQRERVASVV 180


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 642 WGHSLGTAISAHLLGNLEQLSLRVLGRALPPPRGLV 535
           W  +L +AISAH+    EQ++  +L R   P +G+V
Sbjct: 84  WYQTLQSAISAHMKKVREQMA-GILSRI--PEQGVV 116


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 421 VDPEGLHEGSLVVRQPRHQL 480
           VDP G+H G  +V  P   L
Sbjct: 64  VDPLGIHTGESIVVAPSQTL 83


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 642 WGHSLGTAISAHLLGNLEQLSLRVLGRALPPPRGLV 535
           W  +L +AISAH+    EQ++  +L R   P +G+V
Sbjct: 84  WYQTLQSAISAHMKKVREQMA-GILSRI--PEQGVV 116


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 642 WGHSLGTAISAHLLGNLEQLSLRVLGRALPPPRGLV 535
           W  +L +AISAH+    EQ++  +L R   P +G+V
Sbjct: 84  WYQTLQSAISAHMKKVREQMA-GILSRI--PEQGVV 116


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 650 YSYGDTLWERRYQRTSSATWS 588
           Y YGD +    Y  T + TW+
Sbjct: 221 YRYGDAIPTVPYTETETETWT 241


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 301 IDTSFALARWRHRRVTC 251
           +D++  L   RHRRVTC
Sbjct: 48  MDSNEPLLPLRHRRVTC 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,893
Number of Sequences: 438
Number of extensions: 4986
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)