Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17m11
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 58 1e-08
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 42 9e-04
08_02_1581 - 28004060-28004449,28004730-28004888,28004933-280050... 32 0.55
08_02_0013 - 11251368-11252867 31 1.3
03_06_0493 + 34315867-34316124,34316194-34316256,34317346-343176... 29 3.9
09_04_0730 + 19783346-19783372,19783548-19783638,19783973-197840... 29 5.1
03_05_0370 + 23541188-23542537 29 5.1
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 29 5.1
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 57.6 bits (133), Expect = 1e-08
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Frame = -3
Query: 628 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 449
R R KLL+ID++F++ V +DLC PG ++ +S N A
Sbjct: 22 RARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQ-VLSRNLYVPAKQSPDCKEGDLPL 80
Query: 448 KPTVCKRKNFTTITGPDK-SGDVFDKNVVFEISIKCGNAC--DLVLADGSVDVNGRENEQ 278
+ + I G + GD+ + E+ I+ + C DLV+ DG+ DV G +
Sbjct: 81 IVAI-DLQPMAPIEGVIQVQGDITNARTA-EVVIRHFDGCKADLVVCDGAPDVTGLHDMD 138
Query: 277 ERLNFDLIMCETQLILICLRPGGNCVLKVFDAFEHKTI--QMLNKFVNHFEKWVLYKPPS 104
E + LI+ ++ L+ GG V K+F + + Q + F + KP S
Sbjct: 139 EFVQSQLILAALTIVTHVLKVGGKFVAKIFRGKDTSLLYCQCFMQLKLFFSQVTFAKPKS 198
Query: 103 SRPANSERYLICFN 62
SR ++ E + +C N
Sbjct: 199 SRNSSIEAFAVCEN 212
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 41.5 bits (93), Expect = 9e-04
Identities = 41/162 (25%), Positives = 67/162 (41%)
Frame = -3
Query: 628 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 449
R R KLL++D +F LDLC PG + ++ P+ A+ V + +
Sbjct: 23 RSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPV-GAFVVGVDLVPIRPI 81
Query: 448 KPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 269
+ ++ TT + D N V A D+VL DGS +V G ++
Sbjct: 82 RGAHSLTEDITTTKCRAAVRRLMDSNGV--------AAFDVVLHDGSPNVGGAWAQEATA 133
Query: 268 NFDLIMCETQLILICLRPGGNCVLKVFDAFEHKTIQMLNKFV 143
L++ +L + L P G + KVF + ++ I K V
Sbjct: 134 QSSLVIDAVRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQV 175
>08_02_1581 -
28004060-28004449,28004730-28004888,28004933-28005044,
28005160-28005236,28005525-28006076
Length = 429
Score = 32.3 bits (70), Expect = 0.55
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +3
Query: 39 LQYGLTNLLKQIK*RSELAGREEGGLY-KTHFSKWLTNLFNI*IVLCSNASKTFKTQ--- 206
LQ + L KQI+ E AG+E G + +T ++ W + I S+A K F Q
Sbjct: 358 LQLRIEELTKQIEQEDEHAGKERGSAHRRTRYACWPLRRLRV-ISASSSARKWFVDQNGR 416
Query: 207 LPPGRKQI 230
LPPG + +
Sbjct: 417 LPPGTEAL 424
>08_02_0013 - 11251368-11252867
Length = 499
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 133 EKWVLYKPPSSRPANSERYLICFNKLVRPYCNDYVN 26
E+W L+ PS+RP N ++YL+C+ + + D ++
Sbjct: 460 EEWRLH--PSARPCNLDQYLVCYVDRLHSWSGDCIS 493
>03_06_0493 +
34315867-34316124,34316194-34316256,34317346-34317604,
34317710-34317819
Length = 229
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -3
Query: 223 LRPGGNCVLKVFDAFEHKTIQMLNKFVNH-FEKWVLYKPPSSRPANSERYLIC 68
LR GG+ V+K E++ I KF F+K L +P ++R ++ E +++C
Sbjct: 176 LRRGGSLVIKFL---ENEDIPGFGKFCKEKFKKVSLLRPKATRSSSREIFMVC 225
>09_04_0730 +
19783346-19783372,19783548-19783638,19783973-19784051,
19784410-19784743,19784934-19785968,19786141-19786290,
19786781-19787215
Length = 716
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -3
Query: 454 VYKPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGR-ENEQ 278
V P V ++ + PDK+ D+FD + ++S + G + L D D+ + E+E
Sbjct: 106 VEAPYVAPKQKIAIKSSPDKTVDIFDGMTLLDLSKRTGASIG-ALQDILTDLGEKVESEF 164
Query: 277 ERLNFDL 257
+ ++ DL
Sbjct: 165 DAISIDL 171
>03_05_0370 + 23541188-23542537
Length = 449
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -3
Query: 688 FSSKSVVCARSKLFDKRPTRRPRCWRKLLEIDKKFHV--CRHVDTFLDLCGGPGEFANYT 515
+++ + A S+LFD+ PTR W LL FH C V F D+ A +T
Sbjct: 45 YANAGLPAAASRLFDEMPTRDAVAWNALLAC-LVFHARPCAAVAAFRDMA-----TAGFT 98
Query: 514 MSLNPLC 494
+ LC
Sbjct: 99 PTATTLC 105
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -3
Query: 376 KNVVFEISIKCGNACDLVLADGSVDVNGRENEQE---RLNFDLIMCETQLILICL 221
K+ V +++I+C D+V+ G V N E E+E R+ F+ E+ ++++ L
Sbjct: 335 KSAVVKVNIECQVRGDVVIECGHVGENTDEEEEEAMFRIMFNTCFLESNMMVLTL 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,679,706
Number of Sequences: 37544
Number of extensions: 456725
Number of successful extensions: 1125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -