Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17m11
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical... 96 4e-20
AF078792-3|AAC26945.2| 635|Caenorhabditis elegans Hypothetical ... 75 9e-14
Z36238-6|CAA85279.2| 337|Caenorhabditis elegans Hypothetical pr... 62 7e-10
AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical ... 43 3e-04
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 43 3e-04
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 43 3e-04
Z93382-7|CAB07618.1| 214|Caenorhabditis elegans Hypothetical pr... 37 0.023
AF078792-4|AAN84813.1| 261|Caenorhabditis elegans Hypothetical ... 34 0.16
Z80344-3|CAB02488.2| 491|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z50071-7|CAA90405.3| 356|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z50071-6|CAL64000.2| 372|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z50071-5|CAH04718.2| 396|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 29 6.1
>AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical
protein Y53F4B.13 protein.
Length = 927
Score = 95.9 bits (228), Expect = 4e-20
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 14/200 (7%)
Frame = -3
Query: 559 FLDLCGGPGEFANYTMSLNPL--CKAYGVTLTN-NSVCVYKPTVCKRKNFTTITGPDKSG 389
F D+C GPG F+ Y + K +G TL + ++K T + F T G +G
Sbjct: 290 FADVCAGPGGFSEYMLWRKGFYNAKGFGFTLAGKDDFKLFKFTASSQYFFETFYGTKDNG 349
Query: 388 DVFDK-NV-VFEISIKCGNA---CDLVLADGSVDVNGRENEQERLNFDLIMCETQLILIC 224
DV D N+ E I G + L++ADG V G+EN QE L+ L +C+ + L
Sbjct: 350 DVMDPVNIDSLEAHISRGTSGLGVHLMMADGGFSVEGQENIQEILSKRLYLCQLLVSLCI 409
Query: 223 LRPGGNCVLKVFDAFEHKTIQMLNKFVNHFEKWVLYKPPSSRPANSERYLIC------FN 62
+R GGN K+FD F ++ ++ ++ L+KP +SRPANSERY+ C F
Sbjct: 410 VREGGNFFCKLFDIFTPFSVGLIYLMRVCYQSVSLHKPHTSRPANSERYITCKGLRKEFA 469
Query: 61 KLVRPYCNDYVNEWKNQLKN 2
+V+ Y VN ++LKN
Sbjct: 470 NVVKEYLK-RVNRKLDELKN 488
>AF078792-3|AAC26945.2| 635|Caenorhabditis elegans Hypothetical
protein Y40D12A.1a protein.
Length = 635
Score = 74.5 bits (175), Expect = 9e-14
Identities = 39/113 (34%), Positives = 56/113 (49%)
Frame = -3
Query: 406 GPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERLNFDLIMCETQLILI 227
GP GD+ + I K DLV ADGS + G+E E E + LI E ++ L
Sbjct: 191 GPSDDGDIEKFTEEYLIKQKLAGTFDLVTADGSTNTQGKEGEIESIVSSLISAEVEVALK 250
Query: 226 CLRPGGNCVLKVFDAFEHKTIQMLNKFVNHFEKWVLYKPPSSRPANSERYLIC 68
LR G +LK + T ++N ++F KP +SRP +SERY++C
Sbjct: 251 LLRRNGRLILKTYRFCAKSTRDVMNLLADNFSSIKAIKPMASRPGSSERYIVC 303
>Z36238-6|CAA85279.2| 337|Caenorhabditis elegans Hypothetical
protein R74.7 protein.
Length = 337
Score = 61.7 bits (143), Expect = 7e-10
Identities = 48/189 (25%), Positives = 84/189 (44%)
Frame = -3
Query: 628 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 449
R R KL++ID +F + + V +DLC PG ++ + Y V +
Sbjct: 22 RARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSK-----RLYEEDQEAKIVAID 76
Query: 448 KPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 269
+ + G S D ++ V+ S G D+V+ DG+ DV G + E +
Sbjct: 77 LQPMAPIPGVIQLQGDITSVDTANQ-VIKHFS---GEKSDIVICDGAPDVTGIHSLDEFM 132
Query: 268 NFDLIMCETQLILICLRPGGNCVLKVFDAFEHKTIQMLNKFVNHFEKWVLYKPPSSRPAN 89
+LI+ + L+ GGN + K+F + + K +F+K L KP SSR ++
Sbjct: 133 QAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQMK--KYFKKVYLAKPRSSRQSS 190
Query: 88 SERYLICFN 62
E +++C +
Sbjct: 191 CEAFVLCLD 199
>AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical
protein H06I04.3b protein.
Length = 716
Score = 43.2 bits (97), Expect = 3e-04
Identities = 43/187 (22%), Positives = 78/187 (41%)
Frame = -3
Query: 628 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 449
R R KL++++K+F +DLC PG + P+ + +
Sbjct: 25 RSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFMPVSS----LIVGVDLAPI 80
Query: 448 KPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 269
KP KN + G + + + +K +A D VL DG+ +V
Sbjct: 81 KPI----KNCIALQGDITTNET---RAAIKKELKTWSA-DCVLHDGAPNVGLNWVHDAFQ 132
Query: 268 NFDLIMCETQLILICLRPGGNCVLKVFDAFEHKTIQMLNKFVNHFEKWVLYKPPSSRPAN 89
L + +L LR GG V KVF + ++ ++ F F++ ++KP +SR +
Sbjct: 133 QNCLTLSALKLATQILRKGGTFVTKVFRSNDYSC--LIRVFEKLFKRVHVWKPAASRLES 190
Query: 88 SERYLIC 68
+E +++C
Sbjct: 191 AEIFVVC 197
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 43.2 bits (97), Expect = 3e-04
Identities = 43/187 (22%), Positives = 78/187 (41%)
Frame = -3
Query: 628 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 449
R R KL++++K+F +DLC PG + P+ + +
Sbjct: 25 RSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFMPVSS----LIVGVDLAPI 80
Query: 448 KPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 269
KP KN + G + + + +K +A D VL DG+ +V
Sbjct: 81 KPI----KNCIALQGDITTNET---RAAIKKELKTWSA-DCVLHDGAPNVGLNWVHDAFQ 132
Query: 268 NFDLIMCETQLILICLRPGGNCVLKVFDAFEHKTIQMLNKFVNHFEKWVLYKPPSSRPAN 89
L + +L LR GG V KVF + ++ ++ F F++ ++KP +SR +
Sbjct: 133 QNCLTLSALKLATQILRKGGTFVTKVFRSNDYSC--LIRVFEKLFKRVHVWKPAASRLES 190
Query: 88 SERYLIC 68
+E +++C
Sbjct: 191 AEIFVVC 197
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 43.2 bits (97), Expect = 3e-04
Identities = 43/187 (22%), Positives = 78/187 (41%)
Frame = -3
Query: 628 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 449
R R KL++++K+F +DLC PG + P+ + +
Sbjct: 25 RSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFMPVSS----LIVGVDLAPI 80
Query: 448 KPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 269
KP KN + G + + + +K +A D VL DG+ +V
Sbjct: 81 KPI----KNCIALQGDITTNET---RAAIKKELKTWSA-DCVLHDGAPNVGLNWVHDAFQ 132
Query: 268 NFDLIMCETQLILICLRPGGNCVLKVFDAFEHKTIQMLNKFVNHFEKWVLYKPPSSRPAN 89
L + +L LR GG V KVF + ++ ++ F F++ ++KP +SR +
Sbjct: 133 QNCLTLSALKLATQILRKGGTFVTKVFRSNDYSC--LIRVFEKLFKRVHVWKPAASRLES 190
Query: 88 SERYLIC 68
+E +++C
Sbjct: 191 AEIFVVC 197
>Z93382-7|CAB07618.1| 214|Caenorhabditis elegans Hypothetical
protein F45G2.9 protein.
Length = 214
Score = 36.7 bits (81), Expect = 0.023
Identities = 44/189 (23%), Positives = 75/189 (39%)
Frame = -3
Query: 628 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 449
R R KL+EI++KF + T +D+ PG + + P A GV L N V
Sbjct: 33 RARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVVQKCPNGYASGVDLQN----VL 88
Query: 448 KPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 269
+ + IT P + +K ++ + + D + D + R E R
Sbjct: 89 PIRGADILSLSDITDPAVKLKIREKLAHRQVDVVLSDMAPNPTGDNATD-HLRLIELCRS 147
Query: 268 NFDLIMCETQLILICLRPGGNCVLKVFDAFEHKTIQMLNKFVNHFEKWVLYKPPSSRPAN 89
F L E ++ L+ G + K++D + + + + F KP + R +
Sbjct: 148 VFRLFSVENEIELV---KNGVYLCKIWDG--SARAEFVRELSDRFSTVKTVKPTACRDNS 202
Query: 88 SERYLICFN 62
+E YL C N
Sbjct: 203 AELYLFCRN 211
>AF078792-4|AAN84813.1| 261|Caenorhabditis elegans Hypothetical
protein Y40D12A.1b protein.
Length = 261
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 406 GPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 269
GP GD+ + I K DLV ADGS + G+E E E +
Sbjct: 191 GPSDDGDIEKFTEEYLIKQKLAGTFDLVTADGSTNTQGKEGEIESI 236
>Z80344-3|CAB02488.2| 491|Caenorhabditis elegans Hypothetical
protein F15D4.5 protein.
Length = 491
Score = 33.1 bits (72), Expect = 0.28
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Frame = -3
Query: 631 RRPRCW---RKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNN- 464
RR W R+ L KK H C V ++ CG N M N CK Y TL N
Sbjct: 387 RRVSTWFDRREKLTEQKKCHQCLEVYETVEFCGTRDNHTNCPME-NTFCK-YCKTLKGNQ 444
Query: 463 ----SVCVYKPTVCKR--KNFTTITGPDKSGDVFDK 374
+ P VC+ K T P K G + K
Sbjct: 445 PGWKEAAAHHPAVCEHAPKEHNTHEPPMKKGRIMSK 480
>Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical
protein C54E10.1 protein.
Length = 872
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 661 RSKLFDKRPTRRPRCWRKLLEIDK--KFHVCRHV 566
R K+F KRP R C KLLE+ K K H+ R +
Sbjct: 477 RFKIFIKRPERGDVCASKLLEVMKMEKLHILRSI 510
>Z50071-7|CAA90405.3| 356|Caenorhabditis elegans Hypothetical
protein T07D4.2a protein.
Length = 356
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 547 CGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVYKPTVCKRK 425
CG P E N+ L L +Y V + N C + T K K
Sbjct: 128 CGLPNEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLK 168
>Z50071-6|CAL64000.2| 372|Caenorhabditis elegans Hypothetical
protein T07D4.2c protein.
Length = 372
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 547 CGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVYKPTVCKRK 425
CG P E N+ L L +Y V + N C + T K K
Sbjct: 144 CGLPNEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLK 184
>Z50071-5|CAH04718.2| 396|Caenorhabditis elegans Hypothetical
protein T07D4.2b protein.
Length = 396
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 547 CGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVYKPTVCKRK 425
CG P E N+ L L +Y V + N C + T K K
Sbjct: 168 CGLPNEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLK 208
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 228 IKISCVSHMIKSKLRRSCS-FSRPLTSTE-PSANTKSHALPHLMLISNTTFLSNTSPDLS 401
I+ SC+ ++ RR CS R T+T+ PS T+S NTT L ++ D+S
Sbjct: 311 IRSSCLPRYVECHRRRRCSRKQRCHTTTQPPSPTTESLPTSTTTYEMNTTSLETSTTDIS 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,186,875
Number of Sequences: 27780
Number of extensions: 432420
Number of successful extensions: 1115
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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