Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m07
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   0.93 
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   1.2  
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    25   2.8  
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    25   2.8  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    24   4.9  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    24   6.5  
SPCC1494.02c |taf13||transcription factor TFIID complex subunit ...    24   6.5  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    23   8.6  

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 109 YFLLNIICN*NFVFILLKSWI 171
           +FL NII   N++++L K+WI
Sbjct: 30  FFLKNIIVLSNYLYLLYKAWI 50


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 12  IEEYFLINNFSIADYEFEDMFEIV 83
           +E+YF +N   I+D E ED+ +I+
Sbjct: 347 LEKYFEVNALDISDSESEDLSDIL 370


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 177 KCPNPKFLTPMTSNLICVHANKIFRHYDQCVHQ 275
           KC  PK +T +  N       +++  YD+CV +
Sbjct: 100 KCKYPKEMTLIRGNHESRQITQVYGFYDECVRK 132


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 248 KNLVGVHTNQIASHRCQKLGIGAFFLIQDFNKIKTK 141
           KNLVG   N+I   +C+ L   + F I  +  I +K
Sbjct: 209 KNLVGDQLNEIVDSQCETLPSLSEFDINKYLNINSK 244


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 201 TPMTSNLICVHAN 239
           T +T++L+CVHAN
Sbjct: 140 TDLTADLLCVHAN 152


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 162 ILD*KKCPNPKFLTPMTSNLICVHANKI 245
           I+D +K PNP+    + ++ I VH N I
Sbjct: 132 IIDDRKRPNPRLKGFLQASRIIVHENGI 159


>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
           Taf13|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 12  IEEYFLINNFSIADYEFEDMFEIVRI 89
           +EE    +NFS+A + F+ +   +RI
Sbjct: 87  VEELLRSSNFSVAGHPFQGVLSRIRI 112


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 323 TLKWLKWSEANYKNINLM 270
           T+K   W  A Y NI LM
Sbjct: 356 TIKTANWRNATYMNITLM 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,267,404
Number of Sequences: 5004
Number of extensions: 22409
Number of successful extensions: 49
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)