Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m07
         (323 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             24   1.6  
AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    23   3.8  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    22   6.6  

>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 306 VVRSQLQKHKLDARIDHNDEKSCWRAHKS 220
           V+ S L++ K +  ID     +C RAH++
Sbjct: 884 VIDSMLERMKYEKTIDIYGHVTCLRAHRN 912


>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 57  EFEDMFEIVRIDCKDXXXXXAKYNM*LKFCFYFIK 161
           ++ D   +V++D  +     A+YN+     F FIK
Sbjct: 48  KYADKIVVVKVDVDECEELAAQYNIASMPTFLFIK 82


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 299 EANYKNINLMHALIIMTKNLV 237
           ++N K INL HAL +  + L+
Sbjct: 656 DSNVKKINLKHALDLDRRGLL 676


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,042
Number of Sequences: 2352
Number of extensions: 4607
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 22045617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)