Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m07
         (323 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2257|AAF49833.1| 1544|Drosophila melanogaster CG17687-P...    27   5.6  
AY069560-1|AAL39705.1|  632|Drosophila melanogaster LD29184p pro...    26   9.7  
AE014297-1953|AAF55140.1|  632|Drosophila melanogaster CG4203-PA...    26   9.7  
AE014134-2822|AAF53597.2|  391|Drosophila melanogaster CG31744-P...    26   9.7  

>AE014296-2257|AAF49833.1| 1544|Drosophila melanogaster CG17687-PA
            protein.
          Length = 1544

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 174  KKCPNPKFLTPMTSNLICVHANKIFRHYDQCVH 272
            K  P P+F+     +   +   KIFR Y++ VH
Sbjct: 1010 KDIPEPEFMQKKQPHEFNLEEQKIFRAYEEAVH 1042


>AY069560-1|AAL39705.1|  632|Drosophila melanogaster LD29184p
           protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 64  KTCLKLFVLIVKICYYFLL 120
           K  LK+F L++++CYY  L
Sbjct: 216 KEYLKVFFLVLQVCYYLAL 234


>AE014297-1953|AAF55140.1|  632|Drosophila melanogaster CG4203-PA
           protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 64  KTCLKLFVLIVKICYYFLL 120
           K  LK+F L++++CYY  L
Sbjct: 216 KEYLKVFFLVLQVCYYLAL 234


>AE014134-2822|AAF53597.2|  391|Drosophila melanogaster CG31744-PA
           protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 88  LIVKICYYFLLNIICN*NFVFILL 159
           L+VK+C  F++N+  + +F+ ILL
Sbjct: 162 LLVKLCVSFIMNLAISQHFLVILL 185


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,648,768
Number of Sequences: 53049
Number of extensions: 216408
Number of successful extensions: 404
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 695070486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)