Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m07
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical pr...    29   0.77 
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    29   1.0  
Z48585-10|CAJ43439.1|  338|Caenorhabditis elegans Hypothetical p...    27   3.1  
Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    26   7.2  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    26   7.2  
AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical
           protein K08F9.3 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 45  IADYEFEDMFEIVRIDCKDXXXXXAKYNM*LKFCF 149
           +AD+EF+D  +I+    K      AKYN  L F F
Sbjct: 253 VADFEFDDYNDILLNSVKPCNNTKAKYNFSLNFDF 287


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +1

Query: 58  NLKTCLKLFVLIVKICY------YFLLNIICN*NFVFILL 159
           N++TC+ L +L++ +CY      + + N + N NF FI +
Sbjct: 242 NIQTCIPLAILLIPLCYLVISRVFLIYNQVAN-NFCFITI 280


>Z48585-10|CAJ43439.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK673.11b protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 303 VRSQLQKHKLDARIDHNDEKSCWRAH 226
           V S+ Q H+++   ++ DE+SC  AH
Sbjct: 284 VASKFQLHRIEEESENGDEQSCAGAH 309


>Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK673.11a protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 303 VRSQLQKHKLDARIDHNDEKSCWRAH 226
           V S+ Q H+++   ++ DE+SC  AH
Sbjct: 293 VASKFQLHRIEEESENGDEQSCAGAH 318


>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 91  IVKICYYFLLNIICN*NFVFILLKSWIKKNAP 186
           +VK C    LN   + N V I +K+WI+ N P
Sbjct: 64  VVKSCGVAKLNFPEDKNAVNIFVKTWIRGNQP 95


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoformb protein.
          Length = 1420

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 177 KCPNPKFLTPMTSNLICVHANKIFRHYDQC 266
           KC  P FL P+  N   +   K + HY +C
Sbjct: 559 KCAMPGFLYPLKYNTYVLDVFKKYIHYVKC 588


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoforma protein.
          Length = 1418

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 177 KCPNPKFLTPMTSNLICVHANKIFRHYDQC 266
           KC  P FL P+  N   +   K + HY +C
Sbjct: 559 KCAMPGFLYPLKYNTYVLDVFKKYIHYVKC 588


>AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical
           protein F58E1.4 protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 284 NINLMHALIIMTKNLVGVHTNQIASHRCQKLGIGAFFLIQDFNKIKTKF 138
           N+NL +A +   +N++  H   +  H   +L    +FL     +   KF
Sbjct: 412 NLNLTYAFLPKIENIITKHQRTVVVHNNPQLSSEFYFLYPMSYRSNAKF 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,966,316
Number of Sequences: 27780
Number of extensions: 128346
Number of successful extensions: 284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)