Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m07
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   1.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   6.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   6.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.6  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               20   8.6  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 315 MAKVVRSQLQKHKLDARIDHNDEKSCWRAHKSNC 214
           M  V +    K    +R  HN+ +   RAH  NC
Sbjct: 34  MRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNC 67


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 255 NDEKSCWRAHKS 220
           N+  SCW  H+S
Sbjct: 322 NNTLSCWNEHQS 333


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 58  NLKTCLKLFVLIVKICYYFLL 120
           +L+T   +FV+ + IC +F++
Sbjct: 78  SLRTPSNMFVVNLAICDFFMM 98



 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 232 TPTRFFVIMINACIKFMFL 288
           TP+  FV+ +  C  FM +
Sbjct: 81  TPSNMFVVNLAICDFFMMI 99


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 129 YYI*QEVITNLYNQYEQ 79
           +Y   + + NLY QY+Q
Sbjct: 434 FYQLYKKVMNLYQQYQQ 450


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/20 (25%), Positives = 15/20 (75%)
 Frame = -1

Query: 89  NTNNFKHVFKFVICYAKIVN 30
           +T+  ++   F+IC++K+++
Sbjct: 124 STDKCENGLNFIICFSKLLS 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,187
Number of Sequences: 438
Number of extensions: 1638
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)