Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m05
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p...    29   4.4  
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p...    29   4.4  
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact...    29   4.4  
Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical
           protein ZC449.4 protein.
          Length = 76

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 11/37 (29%), Positives = 28/37 (75%)
 Frame = -3

Query: 262 KSSNSSDGIRNKIMPIIMMIGAVLFLGLILYFIYRYM 152
           K+ N +  +RN+++ +++++  +L LG+++YF++R M
Sbjct: 18  KNGNEASSLRNELLALMVLL-CLLILGVVIYFVFRSM 53


>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
           protein 10, isoform b protein.
          Length = 1371

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -2

Query: 866 RLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRR 690
           +LSLPH   A+   + T   R++   +   S       P     +  ++  +GH  GR  
Sbjct: 786 QLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIE 845

Query: 689 LSFVYRRH 666
           +SFVY  H
Sbjct: 846 VSFVYSHH 853


>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
           protein 10, isoform a protein.
          Length = 1563

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -2

Query: 866 RLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRR 690
           +LSLPH   A+   + T   R++   +   S       P     +  ++  +GH  GR  
Sbjct: 786 QLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIE 845

Query: 689 LSFVYRRH 666
           +SFVY  H
Sbjct: 846 VSFVYSHH 853


>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
           molecule UNC-10 protein.
          Length = 1563

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -2

Query: 866 RLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRR 690
           +LSLPH   A+   + T   R++   +   S       P     +  ++  +GH  GR  
Sbjct: 786 QLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIE 845

Query: 689 LSFVYRRH 666
           +SFVY  H
Sbjct: 846 VSFVYSHH 853


>Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical
           protein F08G2.5 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 848 QTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESS 720
           ++  +  S++  PR +RA  +R SKR + KPP T S ++ + S
Sbjct: 59  RSSELPISESPAPRARRARKQR-SKRKSVKPPNTSSDDSSDDS 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,905,769
Number of Sequences: 27780
Number of extensions: 392946
Number of successful extensions: 1112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)