Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m04
         (475 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...   203   3e-54
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    27   0.33 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   0.77 
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    25   1.0  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   5.4  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    22   9.5  
AF203337-1|AAF19832.1|  184|Anopheles gambiae immune-responsive ...    22   9.5  

>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score =  203 bits (495), Expect = 3e-54
 Identities = 104/151 (68%), Positives = 120/151 (79%), Gaps = 1/151 (0%)
 Frame = -3

Query: 452 MADQTE-RSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 276
           MADQ   R+FQKQ  + LNRK    V R +K LR H  +GLGFKTP+EAI GTYIDKKCP
Sbjct: 1   MADQQNIRAFQKQLGINLNRKN---VSR-KKGLRMHHSIGLGFKTPKEAITGTYIDKKCP 56

Query: 275 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 96
           FTG++SIRGRILTGVV+K  +   + IRRDYL ++ KY+ FEKR+RNM +HLSPCFRDVE
Sbjct: 57  FTGHISIRGRILTGVVRKCIV--LLYIRRDYLQFIRKYDTFEKRNRNMRLHLSPCFRDVE 114

Query: 95  IGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
            GDIVT+GECRPLSKTVRFNVLK SK  GSK
Sbjct: 115 AGDIVTLGECRPLSKTVRFNVLKESKMAGSK 145


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 458 SKMADQTERSFQKQPTVFLNRKKGIGVK 375
           +KMAD T+R++ + P +F++   G  +K
Sbjct: 614 TKMADGTQRAYVRLPAMFVSELDGTKIK 641


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 237  GEDAAADRNVASEGTLLVNVGT-LNRLAGSLETEAHILVVSQRFSAPLHTNTFLAVQKDC 413
            GED   D+   S+GTLL  +GT  N +A  + T+  +    +R ++   + +FL    DC
Sbjct: 1268 GEDDTGDKKTDSDGTLL-EIGTWSNEMAVGVGTDNDMGEEGRRGAS---SPSFLRYDSDC 1323


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 270 SEGTLL-VNVGTLNRLAGSLETEAHILVVSQRFSAPLHTNTFLAV 401
           ++G +L +++GTL++LAGSL  E  +        +P H    L++
Sbjct: 303 AQGDVLELDIGTLDQLAGSLADELTLQQNDYFKGSPAHRKPLLSM 347


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 309  RLAGSLETEAHILVVSQRFS 368
            R AGS+E+ AH++    RF+
Sbjct: 954  RCAGSVESVAHVMFECPRFA 973


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 351 PQGCGPRFQDSPRGD 307
           PQG  P F + P GD
Sbjct: 313 PQGMRPNFYNRPMGD 327


>AF203337-1|AAF19832.1|  184|Anopheles gambiae immune-responsive
           serine protease-relatedprotein ISPR9 protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 366 KTVEIPQGCGPRFQD 322
           KTV +PQ CG R  D
Sbjct: 43  KTVSVPQKCGLRNVD 57


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 506,472
Number of Sequences: 2352
Number of extensions: 10145
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)