Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m01
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    29   0.56 
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    29   0.56 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   3.0  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   4.0  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    26   5.2  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   5.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.9  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   6.9  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.9  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.9  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   6.9  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.2  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   9.2  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 490 TEIDGYLLLTIPPTTSFPIRLDFFKTFIWETYNTTHPNGILKMGK 624
           T+IDG  +LT+PP T+     D   + + E YNT      ++M K
Sbjct: 632 TKIDGKPILTLPPKTAVKSETDLSSSEM-EFYNTLQSGAQIQMRK 675


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 580 TYNTTHP---NGILKMGKQKPTQFPPLIQY 660
           T N  +P   N  LK   Q+PT FPP IQY
Sbjct: 176 TSNVAYPPNYNNYLKSPYQQPTNFPPEIQY 205


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 511 LLTIPPTTSFPIRLDFFKTFIWETY 585
           L  I   T FP    FF+TFIW TY
Sbjct: 545 LFIIAGNTGFPC---FFRTFIWTTY 566


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 597 MCCIVSFPNKCFEEIKSNWETCRRWYG 517
           +CCI+SFP   F   +S+W    R  G
Sbjct: 329 LCCILSFPVDSFLAERSSWLIVHREVG 355


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 586 NTTHPNGILKMGKQKPTQFPPLIQYMKMIRYSLS 687
           NT   N +L++     TQ PPL+QY+   ++SLS
Sbjct: 132 NTCFMNSVLQL----MTQTPPLVQYLLSGQHSLS 161


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 562 KTFIWETYNTTHPNGILKMGKQKPTQF 642
           +TF+W++     P  +LK GK K   F
Sbjct: 511 QTFVWDSRKPDKPLSLLKHGKTKMIHF 537


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 373 TSFAHLSKSFFFFSCIRVILYLIFS 299
           +SF  L   FFFF C+ V L  +FS
Sbjct: 148 SSFPILHFLFFFFLCVCVFLSFLFS 172


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 514 LTIPPTTSFPIRLDFFKTFIWE--TYNTTHPN 603
           +T+P     PI  DF+KT   E  T+N + PN
Sbjct: 81  MTLPLDKKLPILRDFYKTIEVEGWTFNESGPN 112


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 771 YTMFCFFLGLFSCVR 727
           + +FC F+GLF C+R
Sbjct: 20  FAIFCAFIGLFLCLR 34


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = -1

Query: 463 VQPLYKLCNCLIQLN----LRPSRAKEPSLS 383
           V  +++LC CL+  N    +RPS   EP  +
Sbjct: 133 VYSIFQLCGCLLMFNNIISIRPSERTEPEFN 163


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 83  IRYKPLHNDIFGPIFSTASVII 148
           I + P+  DIF P+F  AS+I+
Sbjct: 507 IAHDPIQRDIFTPLFLGASLIV 528


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 538  FPIRLDFFKTFI-WETYNTTHPNGILKMGK 624
            FP   DF+K  + WE  N + PN +LK  K
Sbjct: 914  FPSMTDFYKEILSWEPANQS-PNPVLKFHK 942


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 572 INVLKKSSRIGKLVVGGMVSSRYPSISVAKQS 477
           I+++KK   I  L +       YPS+SVAKQS
Sbjct: 68  ISIIKKFPEIEILKLKDYDMFLYPSLSVAKQS 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,412
Number of Sequences: 5004
Number of extensions: 66637
Number of successful extensions: 190
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)