Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17m01
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921...    29   3.1  
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580...    29   4.1  
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070...    28   7.2  
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    28   9.5  

>09_04_0285 +
           16390786-16391291,16391370-16391957,16392034-16392160,
           16392291-16392477,16392585-16392741,16392847-16393201
          Length = 639

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = -1

Query: 502 HLFLSPSSHAIRFVQPLYKLCNCLIQLNLRPSRAKEPSLSSTNTSFAHLSKSFFFFSCIR 323
           H  L  +SH+I   Q  ++      Q N+  +  K   L +   + +   K+FFF+ CI 
Sbjct: 393 HEHLIHNSHSILEAQEEFRAK----QANIFAALDKLYILHNAILAESRFIKAFFFYCCIV 448

Query: 322 VILYLIFSKELPFSV 278
            ++Y++ S +  FS+
Sbjct: 449 FLIYMLTSAKQTFSI 463


>07_03_1615 -
           28157237-28157472,28157649-28157728,28157853-28158009,
           28158379-28158565,28158646-28158772,28159218-28159805,
           28159898-28160443,28161579-28161620,28162081-28162145,
           28162273-28162377,28162682-28162741,28163149-28163237,
           28163611-28163732,28163862-28163968,28164041-28164111,
           28164377-28164470,28165010-28165247,28166112-28166347
          Length = 1049

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 352 KSFFFFSCIRVILYLIFSKELPFSV 278
           K+FFF+ CI  ++YL+ S +  F++
Sbjct: 862 KAFFFYCCITFLVYLLTSAKQTFAI 886


>02_05_0877 +
           32403363-32404662,32406545-32406630,32406709-32407077,
           32407174-32407257,32407362-32407784,32408368-32408434,
           32409238-32409430,32409577-32409680,32409787-32409990,
           32410174-32410427,32410511-32410735,32410812-32411033,
           32411109-32411162,32411337-32411402,32411496-32411633,
           32411979-32412032,32412334-32412393,32412975-32413340,
           32413415-32413582
          Length = 1478

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 736 LCTYFNDIHHWQSYVKN*ENILSFSCIVLTEGTG 635
           LCT+  D+   QS  K+ +N LS  C++  +  G
Sbjct: 327 LCTWCKDLESLQSLKKDADNTLSMPCVLCPKEKG 360


>01_01_0558 +
           4098383-4098510,4100462-4100572,4100765-4100853,
           4100974-4101107,4101337-4101435,4102619-4102994,
           4103883-4104337,4104419-4107409
          Length = 1460

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 710 SLAVLRQKLREYLIIFMYCINGGNWVGFCLPIFN-IPFGCVVL*VSQINVLKKSSRIGKL 534
           ++ V + K R++LI+     +  NW   C P+ +  P   +++     N+      I  +
Sbjct: 465 TMLVKKLKKRKFLIVLDDVWSCSNWELLCAPLSSGTPGSKIIITTRHHNIANTVGTIPSV 524

Query: 533 VVGGMVSSRY 504
           ++GG+  S +
Sbjct: 525 ILGGLQDSPF 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,196,042
Number of Sequences: 37544
Number of extensions: 352128
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)