Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l24
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   1.4  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    26   2.5  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   4.4  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   5.8  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   7.6  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   7.6  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 280 IPMAIDAADIVNYKQGIIKYCFDSGLNHAVLLVGYGVENNIP 155
           +P+++D  + + Y + ++K C    L   VL+V Y V+   P
Sbjct: 359 VPLSLDLMEKMTYTRAVVKECL--RLRPPVLMVPYRVKKAFP 398


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 74  TSVYVLLYPEKSVLSPIRAPSVFKGPIRNVVFNTI 178
           + VYVL+  +K   SPI A  +   P   V++NT+
Sbjct: 178 SKVYVLVRRDKLRASPIMAKRLLANPKVEVLWNTV 212


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 17/67 (25%), Positives = 25/67 (37%)
 Frame = -1

Query: 319 EEKLKDLLRLVGPIPMAIDAADIVNYKQGIIKYCFDSGLNHAVLLVGYGVENNIPYXTFK 140
           EE L  +  LV  I   +      N K   I +  +  L H     G G+  ++P+  F 
Sbjct: 383 EESLAKIENLVYSIFNDLALKGFENEKLEAILHQMEISLKHKSAHFGIGLAQSLPFNWFN 442

Query: 139 NTWGTDW 119
                DW
Sbjct: 443 GADPADW 449


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 201 FRPLSKQYFIIPCL*LTMSAASMAIGIGP 287
           FR  S ++   PCL +++      I IGP
Sbjct: 18  FRSYSSKFLFFPCLIMSLVFMQWLISIGP 46


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 3   YGLCSK*REINK*LQLDASSFLIPQAFMFCCTLKN 107
           Y L  + R +N+ L   +SS L    F+F CT  N
Sbjct: 248 YDLVLQIRFLNRALLRQSSSLLRNNGFLFLCTFVN 282


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 325 VYEEKLKDLLRLVGPI 278
           VY  KL+DL+R+ GPI
Sbjct: 632 VYTAKLEDLMRVGGPI 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,827
Number of Sequences: 5004
Number of extensions: 34722
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)