Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l24
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   2.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   2.9  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   6.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   6.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 180 PTKRTAWFRPLSKQYFIIPCL 242
           P K  AW   LS   F  PCL
Sbjct: 66  PQKIPAWIGELSATKFGFPCL 86


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 180 PTKRTAWFRPLSKQYFIIPCL 242
           P K  AW   LS   F  PCL
Sbjct: 66  PQKIPAWIGELSATKFGFPCL 86


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
          protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 1  DMDYVPNSERLIN 39
          D+D V N+ERL+N
Sbjct: 32 DIDVVLNTERLLN 44


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 77  SVYVLLYPEKSVLSPIRAPSVFKGPI 154
           +VY+ ++P  SVL  IR       P+
Sbjct: 137 NVYIRIFPNGSVLYSIRISLTLSCPM 162


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 77  SVYVLLYPEKSVLSPIRAPSVFKGPI 154
           +VY+ ++P  SVL  IR       P+
Sbjct: 137 NVYIRIFPNGSVLYSIRISLTLSCPM 162


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
          protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 1  DMDYVPNSERLIN 39
          D+D V N+ERL+N
Sbjct: 32 DIDVVLNTERLLN 44


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 262 AADIVNYKQGIIKYCFDSGLNHAVLLVGYGV 170
           AA I   +   +  CF S L  A LLVG  V
Sbjct: 60  AAVITTRRLRSVTNCFVSSLAAADLLVGLAV 90


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 215 ETIFYNTLFIVNNVXSVYGHRNR 283
           +T F+ +  + + + + YG RNR
Sbjct: 250 KTTFFESCGVADLIATCYGGRNR 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,028
Number of Sequences: 438
Number of extensions: 2325
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)