Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l22
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   1.7  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    26   2.9  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    25   6.7  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    25   6.7  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    25   6.7  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    24   8.9  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    24   8.9  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -3

Query: 169 MW---CVGKRQ-Q*FELACLYLVFVSFCVVLHEFFFLTE 65
           MW   CVG R  + F L C YL   S CV+   F  +T+
Sbjct: 128 MWFKNCVGFRNHKFFFLECFYLNLYSICVLYSTFVAITK 166


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 417 YRAFXEHEFSYLAKFFKKTVPELR 346
           Y+ F  H+FSYL +F   T+  +R
Sbjct: 16  YKLFITHKFSYLLRFETVTLNNIR 39


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
           ++APA    V  PH    GTV L+ + +Y+ S
Sbjct: 28  KAAPATGG-VKKPHRYRPGTVALREIRRYQKS 58


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
           ++APA    V  PH    GTV L+ + +Y+ S
Sbjct: 28  KAAPATGG-VKKPHRYRPGTVALREIRRYQKS 58


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
           ++APA    V  PH    GTV L+ + +Y+ S
Sbjct: 28  KAAPATGG-VKKPHRYRPGTVALREIRRYQKS 58


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 335 HPHILSSGTVFLKNLAKYENSCS 403
           +PH  ++G  F+  L KYEN  S
Sbjct: 384 YPHFQNTGGFFVAVLEKYENLTS 406


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 219 LSVRCRKQQMNELSFR-ECGAWERDSNS 139
           L++ C   +    +F   CG W+RDS+S
Sbjct: 335 LNLCCASSETEYFNFGLSCGFWDRDSSS 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,900
Number of Sequences: 5004
Number of extensions: 31158
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)