Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l22
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0028 - 172243-172435,172550-172701,172801-173341,173640-17... 28 2.9
11_06_0365 - 22742886-22744223 28 3.8
11_06_0362 - 22723104-22724441 28 3.8
11_01_0348 - 2607315-2607424,2608634-2609030 27 5.0
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524 27 5.0
06_01_0428 + 3055163-3055573 27 5.0
06_01_0427 - 3054204-3054614 27 5.0
06_01_0425 - 3045557-3046004,3046852-3046856 27 5.0
06_01_0423 - 3039527-3039937 27 5.0
05_04_0449 - 21355439-21355849 27 5.0
04_03_0909 + 20748653-20749063 27 5.0
01_06_1456 + 37507156-37507566 27 5.0
03_03_0032 + 13927959-13930040,13930322-13930798 27 6.6
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91... 27 8.7
>02_01_0028 -
172243-172435,172550-172701,172801-173341,173640-173824
Length = 356
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 166 WCVGKRQQ*FELACLYLVFVSFCVVLHEFFFLTE 65
WCVGKR F A ++ + V +FFFL E
Sbjct: 256 WCVGKRGPVFTAA--FIPVIQIMVAFIDFFFLHE 287
>11_06_0365 - 22742886-22744223
Length = 445
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 192 MNELSFRECGAWERDSNSLNSHAC 121
M + S+RE G W+ S SL S AC
Sbjct: 401 MYKNSWREIGIWDMTSKSLQSFAC 424
>11_06_0362 - 22723104-22724441
Length = 445
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 192 MNELSFRECGAWERDSNSLNSHAC 121
M + S+RE G W+ S SL S AC
Sbjct: 401 MYKNSWREIGIWDMTSKSLQSFAC 424
>11_01_0348 - 2607315-2607424,2608634-2609030
Length = 168
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
+SAPA V PH GTV L+ + KY+ S
Sbjct: 28 KSAPATGG-VKKPHRFRPGTVALREIRKYQKS 58
>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
Length = 652
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 296 HVRSAPAVRARVTHPHILSSGTVFLKNLAKYE-NSCSXNARYHALLSA 436
H +P + +THPH S +F L+ NSCS +A ++ +A
Sbjct: 341 HTSQSPRPQNSITHPH--SGSEIFHHTLSSQRTNSCSPSAGHNGAPTA 386
>06_01_0428 + 3055163-3055573
Length = 136
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
+SAPA V PH GTV L+ + KY+ S
Sbjct: 28 KSAPATGG-VKKPHRFRPGTVALREIRKYQKS 58
>06_01_0427 - 3054204-3054614
Length = 136
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
+SAPA V PH GTV L+ + KY+ S
Sbjct: 28 KSAPATGG-VKKPHRFRPGTVALREIRKYQKS 58
>06_01_0425 - 3045557-3046004,3046852-3046856
Length = 150
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
+SAPA V PH GTV L+ + KY+ S
Sbjct: 42 KSAPATGG-VKKPHRFRPGTVALREIRKYQKS 72
>06_01_0423 - 3039527-3039937
Length = 136
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
+SAPA V PH GTV L+ + KY+ S
Sbjct: 28 KSAPATGG-VKKPHRFRPGTVALREIRKYQKS 58
>05_04_0449 - 21355439-21355849
Length = 136
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
+SAPA V PH GTV L+ + KY+ S
Sbjct: 28 KSAPATGG-VKKPHRFRPGTVALREIRKYQKS 58
>04_03_0909 + 20748653-20749063
Length = 136
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
+SAPA V PH GTV L+ + KY+ S
Sbjct: 28 KSAPATGG-VKKPHRFRPGTVALREIRKYQKS 58
>01_06_1456 + 37507156-37507566
Length = 136
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 302 RSAPAVRARVTHPHILSSGTVFLKNLAKYENS 397
+SAPA V PH GTV L+ + KY+ S
Sbjct: 28 KSAPATGG-VKKPHRFRPGTVALREIRKYQKS 58
>03_03_0032 + 13927959-13930040,13930322-13930798
Length = 852
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 308 APAVRARVTHPHILSSGTVFLKNLAKYENSCSXNARYHALLS 433
+PA R HP G + LK LA+ ++C LL+
Sbjct: 462 SPAARRSYDHPQFNLLGLLILKRLARDHDNCGKIGNTRGLLA 503
>03_01_0115 -
915142-915321,915397-915631,916301-916386,916474-916590,
917271-917591,918386-918772
Length = 441
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 89 KDYTETNKHKIQACEFKLLLS--LSHAPHSRKLSSFICCLRQRTDNI 223
+DY T+KH +Q C +L+S L PH +S+++ Q D +
Sbjct: 165 RDYCTTSKHIVQMCMNVILVSIELGQFPH---VSNYVSKAEQTPDTL 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,627,034
Number of Sequences: 37544
Number of extensions: 181447
Number of successful extensions: 457
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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