Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l22
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 212 TDNISFNTL*NVNNNSKLHFQK 277
           T N+S+ T  N +NNS+L   +
Sbjct: 720 TGNVSYLTTNNTSNNSQLQIPR 741


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 373 FQENRTRAENVRVRNARTHCGRGPD 299
           F +N    EN  +RN++   G+ PD
Sbjct: 565 FIQNLHAGENTIIRNSQQAPGQSPD 589


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/37 (21%), Positives = 17/37 (45%)
 Frame = +2

Query: 32  ILVLNELRYRRFC*KKKFVKDYTETNKHKIQACEFKL 142
           + V+ ++ Y+ FC  ++ V +      H    C F +
Sbjct: 215 LFVMIQVYYKIFCAARRIVLEERRAQSHLEAHCYFDI 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,434
Number of Sequences: 438
Number of extensions: 2278
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)