Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l21
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 29 0.56
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 29 0.74
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 29 0.97
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 27 2.2
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 3.9
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 6.9
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 26 6.9
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 26 6.9
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 29.5 bits (63), Expect = 0.56
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 497 QYYKSSCRRIKKSFFKYNGW-NEQLRFCRTEKFCSLVNLQLNKDGSKKLKRVQR 655
++YK+SC IK S+ + +G+ N + F E C L +K S +K +Q+
Sbjct: 715 RFYKASCSEIKLSYIENSGFTNLEKSFLSEESHCGLE----SKTDSLVIKNIQK 764
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 29.1 bits (62), Expect = 0.74
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +2
Query: 146 KGVVK---SNYAFAVT-NALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTE 295
KGVVK S+Y+ T N +H +++DN LLCK I + +K R + LP E
Sbjct: 673 KGVVKLKASSYSNGDTENDIHMFLLDNFLLLCK-IKIQMKRRVHKLHLRPLPLE 725
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 28.7 bits (61), Expect = 0.97
Identities = 40/203 (19%), Positives = 85/203 (41%), Gaps = 17/203 (8%)
Frame = +2
Query: 113 VILKAAMPVKNKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHE---- 280
V+L ++ + +K ++ S Y + + +Y ++ + C I++ R +++
Sbjct: 798 VVLYDSLQLAHKVILNSFYGYVMRKGSRWYSIEMAGITCLTGATIIQMARQIVERAGRPL 857
Query: 281 ---------MLPTEKRIRLSFEKCSKGIEVPLYEKLLLNHMMRINDDNLQWPSLMNNKKI 433
+LP F+K S G Y ++LNH++ N Q+ +L + +K+
Sbjct: 858 ELDTDGIWCILPESFPENFEFKKKSGGKVFISYPCVMLNHLVHEKFTNHQYSALKDPEKL 917
Query: 434 M--EWNANRGFDESNKILHVYIGQYYKSSCRRIKKSF--FKYNGWNEQLRFCRTEKFCSL 601
+ + N F E + I + +KK + F ++G +L+ ++
Sbjct: 918 VYETTSENSIFFEVDGPYRAMILPASTEEGKNLKKRYAVFNFDGSLAELKGFEVKR---R 974
Query: 602 VNLQLNKDGSKKLKRVQRKCDKL 670
L+L KD ++ +V K D L
Sbjct: 975 GELKLIKDFQSQIFKVFLKGDSL 997
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 14 LAIWDFIIITNXFRRCLSMLLFKHKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNAL 193
L I ++++ +R + +F + CL+ IL N + NY F + N +
Sbjct: 61 LTILMVCLLSSSEKRKHPVFVFNSASIVAMCLRAILNIVTICSNSYSILVNYGF-ILNMV 119
Query: 194 HYYI 205
H Y+
Sbjct: 120 HMYV 123
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +2
Query: 299 RIRLSFEKCSKGIEVPLYEKLLLNHMM-----RINDDNLQWPSLMNNKKIMEWNANRGFD 463
+ R+ + K + + LY++ L+++ RI W M + W + D
Sbjct: 181 KARILYAKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTRVQQLD 240
Query: 464 ESNKILHVYIGQYY 505
N ++ YIG YY
Sbjct: 241 PKNTVVDTYIGLYY 254
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 509 SSCRRIKKSFFKYNGWNEQLRFCRTEKFCSLVNLQLNKDGSKKL 640
S C R +KSF + N + R E + + QLN SKKL
Sbjct: 138 SQCNRTRKSFVELNALQTSIDTIRNE--LNELRDQLNDSESKKL 179
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +2
Query: 263 LLIKHEMLPTEKRIRLSFEKCSKGI---EVPLYE-KLLLNHMMRINDDNLQW 406
L + HE P+ +I+ +K G ++P YE K++LN ++++ NL+W
Sbjct: 8 LPLSHEQ-PSYSQIKDVLDKIPTGEHLWDLPKYEEKIILNWLIKLLATNLEW 58
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 155 VKSNYAFAVT--NALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKRIRLSFEKCS 328
VKS +A + NA + +D LL + ++ +L K + E+ I+ + KC+
Sbjct: 910 VKSKHALPLVEANAPPWEPIDFSSLLESPVPNPVEPNKLSEKELDMTVEQWIKFMYAKCA 969
Query: 329 KGIEVPLYEKL 361
K E EK+
Sbjct: 970 KEFEEACEEKI 980
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,787
Number of Sequences: 5004
Number of extensions: 68281
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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