Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l21
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 35 0.083
05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399... 32 0.44
06_02_0050 - 10951725-10951910,10951988-10952021,10952521-109527... 30 1.8
11_01_0536 + 4243306-4243449,4243790-4243856,4243996-4244054,424... 29 5.4
04_01_0473 + 6175882-6176125,6176458-6176539,6176798-6176907,617... 29 5.4
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 29 5.4
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 29 5.4
08_01_0941 - 9301603-9301788,9301866-9301958,9302060-9302120,930... 28 7.2
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 28 9.5
08_01_1064 + 10841095-10842326,10842412-10842663,10842942-108430... 28 9.5
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 28 9.5
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 34.7 bits (76), Expect = 0.083
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = +2
Query: 80 KHKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAIKVR 259
KH+E +K V + P K A A H Y+ + +C + ++ ++
Sbjct: 173 KHEESHVKLDYVEVVCCEPGCMKTFTNVECLRAHNQACHQYVQCD---ICGEKHLKKNIK 229
Query: 260 RLLIKHEMLPTEKRIRLSFEKC 325
R L HE +P+ +RI+ SFE C
Sbjct: 230 RHLRAHEEVPSTERIKCSFEGC 251
>05_03_0413 +
13639476-13639537,13639702-13639783,13639865-13639940,
13640016-13640101,13640294-13640370,13641138-13641194,
13641294-13641378,13642331-13642417,13642603-13642683,
13643748-13643885,13643962-13644147,13644242-13644268
Length = 347
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 449 NRGFDESNKILHVYIGQYYKSSCRRIKKSFFKYNGWNEQLRFCRTEKFCSLVNLQLNKDG 628
++ F + HV Y +CR+ KK++ + +++ L+ KFC L N+QL+K
Sbjct: 106 DKNFTRGRRTTHVAAACLY-IACRQSKKAYLLID-FSDHLQISVFAKFCYLRNIQLSKSS 163
Query: 629 S 631
S
Sbjct: 164 S 164
>06_02_0050 -
10951725-10951910,10951988-10952021,10952521-10952772,
10953093-10954114
Length = 497
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 83 HKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNALHYYIVDNPHLLCK 232
HK+ I Q I +A + +NK VV + Y F V D P L C+
Sbjct: 394 HKDKLITVAQYIGRAFLHFQNKRVVMAAYNFKVNGRYRTNAEDLPRLQCR 443
>11_01_0536 +
4243306-4243449,4243790-4243856,4243996-4244054,
4244157-4244314,4244742-4244990,4245079-4245451,
4245580-4245702
Length = 390
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/72 (26%), Positives = 40/72 (55%)
Frame = +2
Query: 149 GVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKRIRLSFEKCS 328
G + +N V N ++ ++ +LL KD+N+ R + +LP+E +I+L +KCS
Sbjct: 71 GKILNNDTGDVANDFYHRYKEDVNLL-KDMNMDA-FRFSIAWTRILPSEFQIKLENQKCS 128
Query: 329 KGIEVPLYEKLL 364
+ + +Y+ ++
Sbjct: 129 NILFIRVYDHIV 140
>04_01_0473 +
6175882-6176125,6176458-6176539,6176798-6176907,
6177234-6177388,6177473-6178212,6178298-6178549,
6178960-6178993,6179071-6179253,6179533-6179637
Length = 634
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 83 HKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNALHYYIVDNPHL 223
HKE I +Q I +A + +NK VV + Y F V D P L
Sbjct: 497 HKEKLITVVQYIGRAFLHFQNKRVVMAAYNFKVNGRYRTNTEDLPRL 543
>02_03_0220 + 16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 407 PSLMNNKKIMEWNANRGFDESNKILHVYIGQYYK 508
P+LMN ++ E+N G +S L YIG+ K
Sbjct: 1154 PALMNEYRVPEFNVRNGILKSLSFLFEYIGEMGK 1187
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 83 HKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNALHYY 202
HK+ I Q I +A + +NK V+K+ Y F T YY
Sbjct: 495 HKQKMIIVAQCIGRAFLHFQNKRVIKATYNFKGTILCGYY 534
>08_01_0941 -
9301603-9301788,9301866-9301958,9302060-9302120,
9302397-9302648,9302903-9303720,9303993-9304490
Length = 635
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 83 HKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNALHYY 202
HKE I Q I +A + +NK VV + Y F NA YY
Sbjct: 492 HKEKLISVTQYIGRAFLHFQNKRVVMAAYNF---NAYQYY 528
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 481 QNFVALVKTAVGVPFHNF 428
QN V +K++V +PFHNF
Sbjct: 642 QNMVDKIKSSVALPFHNF 659
>08_01_1064 +
10841095-10842326,10842412-10842663,10842942-10843020,
10843274-10843459
Length = 582
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 83 HKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNALHYY 202
HKE I Q I +A + +NK VV + Y F NA YY
Sbjct: 464 HKEKLITIAQYIGRAFLHFQNKRVVMAAYNF---NAYEYY 500
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 83 HKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTN 187
HKE I Q I +A + +NK VV + Y F VT+
Sbjct: 709 HKEKLITVAQYIGRAFLHFQNKRVVMAAYNFNVTS 743
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,964,869
Number of Sequences: 37544
Number of extensions: 394395
Number of successful extensions: 970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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