Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l21
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41026-3|AAL02447.3| 817|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z81586-10|CAD56598.1| 349|Caenorhabditis elegans Hypothetical p... 30 2.1
U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 6.4
AF016445-10|AAC69056.2| 178|Caenorhabditis elegans Hypothetical... 28 6.4
Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical p... 28 8.5
Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical pr... 28 8.5
>U41026-3|AAL02447.3| 817|Caenorhabditis elegans Hypothetical
protein C28G1.3 protein.
Length = 817
Score = 31.1 bits (67), Expect = 0.91
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 269 IKHEMLPTEKRIR-LSFEKCSKGIEVPLYEKLLLNHMMRINDDNLQWPSLMNNKKIMEWN 445
IK E + + I+ +S C K E+ Y KL+ N ++ + P L N K+ E
Sbjct: 106 IKEETVAIDAEIQQISQRLCQKKQEIVRYRKLMKNAKTAMDQIAVCLPVLENYAKLQEQM 165
Query: 446 ANRGFDESNKIL 481
+NR + ++ K L
Sbjct: 166 SNRKYYQALKTL 177
>Z81586-10|CAD56598.1| 349|Caenorhabditis elegans Hypothetical
protein T05F1.13 protein.
Length = 349
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 176 AVTNALHYYIVDNPHLLCKDINVAIK 253
A+T+ L Y++ NP+L C +IN A++
Sbjct: 184 AITSDLLEYLLQNPNLFCLNINCAVR 209
>U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical
protein C46H3.2b protein.
Length = 577
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 326 SKGIEVPLYEKLLLN--HMMRINDDNLQWPSLMNNKKIMEW 442
S GI+ P + K L++ H +I D QWPS++ N + EW
Sbjct: 238 SLGIKNPDHRKKLMSDIHSWKIID---QWPSVVPNNSLREW 275
>U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical
protein C46H3.2a protein.
Length = 713
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 326 SKGIEVPLYEKLLLN--HMMRINDDNLQWPSLMNNKKIMEW 442
S GI+ P + K L++ H +I D QWPS++ N + EW
Sbjct: 374 SLGIKNPDHRKKLMSDIHSWKIID---QWPSVVPNNSLREW 411
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 80 KHKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAI 250
KH ++ I LQVIL AA NK V VT L + D P ++ + ++V I
Sbjct: 1811 KHPKLQIAALQVILLAA---ANKECVTDLATCNVTTTLFTLLRDQPKMIARVLDVLI 1864
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 80 KHKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAI 250
KH ++ I LQVIL AA NK V VT L + D P ++ + ++V I
Sbjct: 1819 KHPKLQIAALQVILLAA---ANKECVTDLATCNVTTTLFTLLRDQPKMIARVLDVLI 1872
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 80 KHKEVFIKCLQVILKAAMPVKNKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAI 250
KH ++ I LQVIL AA NK V VT L + D P ++ + ++V I
Sbjct: 1819 KHPKLQIAALQVILLAA---ANKECVTDLATCNVTTTLFTLLRDQPKMIARVLDVLI 1872
>AF016445-10|AAC69056.2| 178|Caenorhabditis elegans Hypothetical
protein T05B4.4 protein.
Length = 178
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 511 QLSPHKKKFFQIQRVERAAAVLQNRKIL*FSQLATEQ 621
+LS +K FQI + +R ++NR + FS+L +Q
Sbjct: 25 ELSDYKLHKFQIHKTQRFLLKIENRPLFKFSKLQVKQ 61
>Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 164 NYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKRIRLSFEKCSKGIEV 343
NY + L ++D+ L +I A ++ +I+ E L E L C+K +E+
Sbjct: 133 NYGVFLNQHLACIVIDH-FLKTSNIQAAARIVTWMIQQEELDNELLNILGLYVCAKWVEL 191
Query: 344 PLYEKLL 364
P+ ++ L
Sbjct: 192 PVEQQTL 198
>Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 164 NYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKRIRLSFEKCSKGIEV 343
NY + L ++D+ L +I A ++ +I+ E L E L C+K +E+
Sbjct: 133 NYGVFLNQHLACIVIDH-FLKTSNIQAAARIVTWMIQQEELDNELLNILGLYVCAKWVEL 191
Query: 344 PLYEKLL 364
P+ ++ L
Sbjct: 192 PVEQQTL 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,333,960
Number of Sequences: 27780
Number of extensions: 403042
Number of successful extensions: 1017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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