Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l21
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.3  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.6  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.6  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.6  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 297 NELDYRLKNVPKELKFRYTK 356
           NE+++R+ N P     RYT+
Sbjct: 391 NEVNFRILNAPVNQLIRYTR 410


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 324  HFSNDNLIRFSVGSISCLINNRLTFMATFMSLHNKC 217
            +F +D+   F VG  +CL      F+A++  + N+C
Sbjct: 1600 NFDHDSTNDF-VGPKNCLFRKPEHFVASYALISNQC 1634


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 530 KSFFKYNGWNEQLRFCRTEKFCSLVNLQLNK 622
           K FFK     +    CR EK C +   Q N+
Sbjct: 131 KGFFKRTVRKDLSYACREEKSCIIDKRQRNR 161


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 530 KSFFKYNGWNEQLRFCRTEKFCSLVNLQLNK 622
           K FFK     +    CR EK C +   Q N+
Sbjct: 131 KGFFKRTVRKDLSYACREEKSCIIDKRQRNR 161


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 257 RRLLIKHEMLPTEKRIRLSFE 319
           RR+ I H +  TE++I++ F+
Sbjct: 37  RRIEIAHALCLTERQIKIWFQ 57


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 257 RRLLIKHEMLPTEKRIRLSFE 319
           RR+ I H +  TE++I++ F+
Sbjct: 37  RRIEIAHALCLTERQIKIWFQ 57


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 257 RRLLIKHEMLPTEKRIRLSFE 319
           RR+ I H +  TE++I++ F+
Sbjct: 37  RRIEIAHALCLTERQIKIWFQ 57


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 257 RRLLIKHEMLPTEKRIRLSFE 319
           RR+ I H +  TE++I++ F+
Sbjct: 299 RRIEIAHALCLTERQIKIWFQ 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,720
Number of Sequences: 438
Number of extensions: 4656
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)