Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l20
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 51 2e-07
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 31 0.16
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 30 0.37
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 30 0.49
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 0.64
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 28 1.5
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 2.6
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 3.4
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 27 3.4
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 27 3.4
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 3.4
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 4.5
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 27 4.5
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 26 6.0
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 6.0
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 26 6.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.0
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 7.9
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 7.9
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 26 7.9
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 7.9
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 50.8 bits (116), Expect = 2e-07
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 5/207 (2%)
Frame = -2
Query: 702 ILSMAISEHDDILTVGMIDGIISIRKREEPVRQSEKRKNLLKFIPDHTSQT--KADTVEV 529
ILSM +S L VGM +G +S R R +Q+ + L + K +
Sbjct: 294 ILSMGLSPDSCNLVVGMSNGTLSQRTRRI-TKQTSSKTPFLGGVGSAFGVVGKKKQIYKG 352
Query: 528 ANE---VKINKKQKLPDCDVLIRKMQFSKALTVVLRPYISVKYPEKTTAVIQELLRREVL 358
N+ V+ ++++L D ++ +S AL +VL P ++ ELL L
Sbjct: 353 ENDEFYVEEARRKRLRPFDKALKSFCYSDALDMVLEN----GSPVLIITMLIELLHVGGL 408
Query: 357 RVAIENLEEKFIGLLLKFLISKLGETRFTRTIVDATNVFIDIFEGKINMFSPENLYLYKC 178
R+A+ N ++ + L+ FL + + RF+ T+ T+ +DI+ + + K
Sbjct: 409 RIALSNRDDLSLTPLINFLRKYIRDPRFSETLCIVTSTILDIYGAALGGSVMVENAISK- 467
Query: 177 LFKRVESEIKVCKSIAELEGAINLIMA 97
L ++VE E+ V + EL G + ++ A
Sbjct: 468 LREKVEQEVAVTQRANELVGMLQMLSA 494
Score = 49.2 bits (112), Expect = 7e-07
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = -1
Query: 841 NXTKPVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNIDF 713
N K +T L + S N+RL+S LD HVKIY++S +KVVH + +
Sbjct: 248 NHQKSITCLAMNSENTRLLSGGLDGHVKIYNISDWKVVHGMKY 290
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -1
Query: 862 TFIPIFRNXTKPVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNI 719
T + F PV +L LA +SRL S SLD +K +D+ K VH +
Sbjct: 425 TCLHTFSAHIGPVQSLALA--DSRLFSCSLDGTIKQWDIEKKKCVHTL 470
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.3 bits (65), Expect = 0.37
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 826 VTTLRLASNNSRLMSASLDRHVKIYDVSTF 737
+T+L ++ + S L+S S+D V+I+DV F
Sbjct: 222 ITSLAISKDGSSLLSNSMDNTVRIFDVKPF 251
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 832 KPVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNID 716
KPVT + L + N L++ASLD +K +D + ++ ++D
Sbjct: 490 KPVTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLD 528
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 29.5 bits (63), Expect = 0.64
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 267 TIVDATNVFIDIFEGKINMFSPENLYLYKCLFKRVESEIKVCKS 136
+I DA + + IF+ +N FS N L + K+ E EIK KS
Sbjct: 432 SIPDAIFLLLSIFDSFVNKFSELNDSLDQFFKKKYEEEIKETKS 475
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 835 TKPVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNID 716
T P L + N RL+ A L+ + +YD+S ++H I+
Sbjct: 82 TFPTPLLAVKLNRKRLL-AVLEEQIYVYDISNMLLLHTIE 120
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 829 PVTTLRLASNNSRLMSASLDRHVKIYDV-STFKVVHNIDFP 710
PV++L S+ S L S S D+ V+I+D+ S +V + P
Sbjct: 469 PVSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIP 509
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -1
Query: 805 SNNSRLMSASLDRHVKIYDVSTFK 734
SNN +++SAS D+ +K++D+ + K
Sbjct: 101 SNNRQILSASGDKLIKLFDLDSSK 124
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = -3
Query: 602 LKKEKIY*NSSLITPVKQ---KRILWRLQMK*KLIKNRNFQIVMSLSEKCNSAKH*Q-LF 435
LK+++ + +SS++ P++ KR L+ ++ + K R F + +SL C H + ++
Sbjct: 164 LKEDQSWKHSSILRPLETLNFKRFLFGNEI---MSKTRAFVMFVSLKH-CEDCFHWEAVW 219
Query: 434 SGHTYL*NTRKKLQLSFKNCLEEK 363
S T NT ++L+++ NC EEK
Sbjct: 220 SSITR--NTDERLKMAQVNCDEEK 241
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = -2
Query: 462 QFSKALTVVLRPYISVKYPEKTTAVIQELLRREVLRVAIENLEEKFIGLLLK 307
Q ++ L + R Y + + TA++QE+ RR+ + ++ ++F+G L K
Sbjct: 360 QLAQELVQLERHY--THFAKAYTALLQEIHRRQTYENCVRSIVDEFVGRLEK 409
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 823 TTLRLASNNSRLMSASLDRHVKIYDVSTFKV 731
T++R ++N L S ++ V I+D+STF V
Sbjct: 28 TSIRFSTNGYHLASGLVNGSVVIWDLSTFSV 58
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 784 SASLDRHVKIYDVSTFKVVHNID 716
++S D+ V+IY+ +T+ +VH ID
Sbjct: 307 TSSQDKSVRIYNSNTYNLVHVID 329
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/46 (21%), Positives = 26/46 (56%)
Frame = -1
Query: 847 FRNXTKPVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNIDFP 710
+ T + T + +++ ++S + D ++++DV T K ++ +FP
Sbjct: 48 YEGHTGAIWTCDINKSSTLMVSGAADNTMRLWDVKTGKQLYKWEFP 93
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 799 NSRLMSASLDRHVKIYDVSTFKVVHNIDFP 710
+ RL +AS D ++I+DVST ++ I P
Sbjct: 189 SGRLYTASEDNTIRIWDVSTGNLLTTIALP 218
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 850 IFRNXTKPVTTLRLASNNSRLMSASLDRHVKIYDVS 743
+F +K VTT N SR + SLD + +D++
Sbjct: 84 MFPGHSKIVTTTTFDKNGSRFYTGSLDNTIHCWDLN 119
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 206 ENMLILPSNMS--MKTLVASTIVLVNLVSPNLEIRNLSSRPINFSSKF 343
E L P N ++ L +L NL +E+RN+ RPI S +
Sbjct: 126 EEKLYAPENSPGFVEVLEGEIELLPNLPRTPIEVRNMGDRPIQVGSHY 173
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 6.0
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 332 SSKFSMATLKTSLLSNS*MTAV-VFSGYFTDMYGLRTTVSALLNCIFLIRTSQSGSFCFL 508
SS FS+ + S+ S+S +++ V SGY + V + ++ F SGS
Sbjct: 3530 SSSFSLTSENGSVSSSSLVSSSPVLSGYSESSFDSSVFVPSSVSRSFSYSRFSSGSLDSS 3589
Query: 509 LIFTSFATSTVS 544
+F S ST S
Sbjct: 3590 SVFNSTTVSTAS 3601
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = -2
Query: 684 SEHDDILTVGMIDGIIS-IRKREEPVRQSEKRKNLLKFIPDHTSQTKADTVEVANE-VKI 511
+E +I+T ++ + + I + E + S +LK++ + K DT+E ANE V+
Sbjct: 685 NEEKEIVTNLLLSALRALISENAENIWVSHWLNLMLKYVESNFLSVKKDTIEEANEPVQE 744
Query: 510 NKKQKLPD 487
N ++ D
Sbjct: 745 NTSEEQED 752
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 609 RQSEKRKNLLKFIPDHTSQTKADTVEVANEVKINKKQKLPDCDVLIRKMQFS 454
R+SE +KNL+ +PD T+ D A+ I + ++LP I + + S
Sbjct: 819 RKSETKKNLVSILPD----TEVDEYPKASNEWIVESEELPQVHETINQYRKS 866
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +3
Query: 483 HNLEVSVF----Y*FSLHL-QPPQYPLLFDWCDQG*ILIDFFFFQIV 608
HNL VS + ++LH QPP +P DQ +L D+ Q+V
Sbjct: 256 HNLPVSFYDNYKLKYTLHFWQPPSFPDSSTIDDQAKLLFDYVVSQVV 302
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 629 ENERSQSDNLKKEKIY*NSSLITPVKQKRILWR 531
ENE SQ+ +E+I+ N LI +K + + W+
Sbjct: 446 ENELSQAGVNLQEQIHQNDDLIESLKNQILTWK 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,745
Number of Sequences: 5004
Number of extensions: 66375
Number of successful extensions: 242
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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