Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l19
(778 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74792-1|CAA99055.1| 335|Homo sapiens CCAAT transcription bindi... 42 0.003
U78774-1|AAC51669.1| 335|Homo sapiens NFY-C protein. 42 0.003
S74703-1|AAB32534.1| 304|Homo sapiens histone H1 transcription ... 42 0.003
D89986-1|BAA14051.1| 335|Homo sapiens HSM-2 protein. 42 0.003
D85425-1|BAA12818.1| 335|Homo sapiens transactivator HSM-1 prot... 42 0.003
BT020081-1|AAV38884.1| 335|Homo sapiens nuclear transcription f... 42 0.003
BC005003-1|AAH05003.1| 335|Homo sapiens nuclear transcription f... 42 0.003
AL354914-9|CAI16538.1| 185|Homo sapiens nuclear transcription f... 42 0.003
AL354914-8|CAI16537.1| 256|Homo sapiens nuclear transcription f... 42 0.003
AL354914-6|CAI16535.1| 254|Homo sapiens nuclear transcription f... 42 0.003
AL354914-4|CAI16530.1| 439|Homo sapiens nuclear transcription f... 42 0.003
AL354914-3|CAI16533.1| 458|Homo sapiens nuclear transcription f... 42 0.003
AL354914-1|CAI16531.1| 335|Homo sapiens nuclear transcription f... 42 0.003
AK000346-1|BAA91100.1| 439|Homo sapiens protein ( Homo sapiens ... 42 0.003
AF191744-1|AAG28389.1| 458|Homo sapiens NFY-C variant DS2.8 pro... 42 0.003
AB208975-1|BAD92212.1| 378|Homo sapiens nuclear transcription f... 42 0.003
U62296-1|AAC50816.1| 335|Homo sapiens transcription factor NF-Y... 40 0.008
AL354914-2|CAI16532.1| 301|Homo sapiens nuclear transcription f... 40 0.008
BC113448-1|AAI13449.1| 99|Homo sapiens late cornified envelope... 31 3.5
BC113446-1|AAI13447.1| 99|Homo sapiens late cornified envelope... 31 3.5
AL139247-8|CAI21686.1| 99|Homo sapiens late cornified envelope... 31 3.5
AB126079-1|BAD20206.1| 202|Homo sapiens keratin associated prot... 31 3.5
BC130605-1|AAI30606.1| 110|Homo sapiens late cornified envelope... 31 4.6
BC130603-1|AAI30604.1| 110|Homo sapiens late cornified envelope... 31 4.6
AL139247-4|CAI21682.1| 110|Homo sapiens late cornified envelope... 31 4.6
BC104821-1|AAI04822.1| 148|Homo sapiens hypothetical protein FL... 27 6.8
BC104819-1|AAI04820.1| 148|Homo sapiens hypothetical protein FL... 27 6.8
>Z74792-1|CAA99055.1| 335|Homo sapiens CCAAT transcription binding
factor, gamma subunit protein.
Length = 335
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>U78774-1|AAC51669.1| 335|Homo sapiens NFY-C protein.
Length = 335
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>S74703-1|AAB32534.1| 304|Homo sapiens histone H1 transcription
factor large subunit 2A protein.
Length = 304
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 186 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 220
>D89986-1|BAA14051.1| 335|Homo sapiens HSM-2 protein.
Length = 335
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>D85425-1|BAA12818.1| 335|Homo sapiens transactivator HSM-1
protein.
Length = 335
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>BT020081-1|AAV38884.1| 335|Homo sapiens nuclear transcription
factor Y, gamma protein.
Length = 335
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>BC005003-1|AAH05003.1| 335|Homo sapiens nuclear transcription
factor Y, gamma protein.
Length = 335
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>AL354914-9|CAI16538.1| 185|Homo sapiens nuclear transcription
factor Y, gamma protein.
Length = 185
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 101 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 135
>AL354914-8|CAI16537.1| 256|Homo sapiens nuclear transcription
factor Y, gamma protein.
Length = 256
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 121 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 155
>AL354914-6|CAI16535.1| 254|Homo sapiens nuclear transcription
factor Y, gamma protein.
Length = 254
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>AL354914-4|CAI16530.1| 439|Homo sapiens nuclear transcription
factor Y, gamma protein.
Length = 439
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>AL354914-3|CAI16533.1| 458|Homo sapiens nuclear transcription
factor Y, gamma protein.
Length = 458
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>AL354914-1|CAI16531.1| 335|Homo sapiens nuclear transcription
factor Y, gamma protein.
Length = 335
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>AK000346-1|BAA91100.1| 439|Homo sapiens protein ( Homo sapiens
cDNA FLJ20339 fis, clone HEP12350. ).
Length = 439
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>AF191744-1|AAG28389.1| 458|Homo sapiens NFY-C variant DS2.8
protein.
Length = 458
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 253
>AB208975-1|BAD92212.1| 378|Homo sapiens nuclear transcription
factor Y, gamma variant protein.
Length = 378
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 263 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 297
>U62296-1|AAC50816.1| 335|Homo sapiens transcription factor NF-YC
subunit protein.
Length = 335
Score = 40.3 bits (90), Expect = 0.008
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = -3
Query: 722 TQQPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
T Q + ++QQ++T GE+QQ+P+QL Q+ IRL
Sbjct: 219 TGQTMQVMQQIITNTGEIQQIPVQLNAGQVQYIRL 253
>AL354914-2|CAI16532.1| 301|Homo sapiens nuclear transcription
factor Y, gamma protein.
Length = 301
Score = 40.3 bits (90), Expect = 0.008
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = -3
Query: 716 QPLALVQQVVTPAGELQQLPIQLTQAQLNMIRL 618
Q + ++QQ++T GE+QQ+P+QL QL IRL
Sbjct: 187 QTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRL 219
>BC113448-1|AAI13449.1| 99|Homo sapiens late cornified envelope 4A
protein.
Length = 99
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 640 ACVNWIGSCCSSPAGVTTCCTS-ARGCCVT 726
+C I SCC S +G CC+S GCC++
Sbjct: 32 SCPPPISSCCGSSSGGCGCCSSEGGGCCLS 61
>BC113446-1|AAI13447.1| 99|Homo sapiens late cornified envelope 4A
protein.
Length = 99
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 640 ACVNWIGSCCSSPAGVTTCCTS-ARGCCVT 726
+C I SCC S +G CC+S GCC++
Sbjct: 32 SCPPPISSCCGSSSGGCGCCSSEGGGCCLS 61
>AL139247-8|CAI21686.1| 99|Homo sapiens late cornified envelope 4A
protein.
Length = 99
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 640 ACVNWIGSCCSSPAGVTTCCTS-ARGCCVT 726
+C I SCC S +G CC+S GCC++
Sbjct: 32 SCPPPISSCCGSSSGGCGCCSSEGGGCCLS 61
>AB126079-1|BAD20206.1| 202|Homo sapiens keratin associated protein
protein.
Length = 202
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 637 CACVNWIGSCCSSPAGVTTCCTSARGCCV 723
C C + GSCC S CC S+ CCV
Sbjct: 148 CCCSSGCGSCCQSSCCNPCCCQSS--CCV 174
>BC130605-1|AAI30606.1| 110|Homo sapiens late cornified envelope 2D
protein.
Length = 110
Score = 31.1 bits (67), Expect = 4.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 664 CCSS-PAGVTTCCTSARGCC 720
CC S P+G + CC S+ GCC
Sbjct: 91 CCESEPSGASGCCHSSGGCC 110
>BC130603-1|AAI30604.1| 110|Homo sapiens late cornified envelope 2D
protein.
Length = 110
Score = 31.1 bits (67), Expect = 4.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 664 CCSS-PAGVTTCCTSARGCC 720
CC S P+G + CC S+ GCC
Sbjct: 91 CCESEPSGASGCCHSSGGCC 110
>AL139247-4|CAI21682.1| 110|Homo sapiens late cornified envelope 2D
protein.
Length = 110
Score = 31.1 bits (67), Expect = 4.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 664 CCSS-PAGVTTCCTSARGCC 720
CC S P+G + CC S+ GCC
Sbjct: 91 CCESEPSGASGCCHSSGGCC 110
>BC104821-1|AAI04822.1| 148|Homo sapiens hypothetical protein
FLJ12331 protein.
Length = 148
Score = 26.6 bits (56), Expect(2) = 6.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 679 AGVTTCCTSARGCCVT 726
AG+ C TSARGC T
Sbjct: 53 AGIDNCYTSARGCTAT 68
Score = 22.6 bits (46), Expect(2) = 6.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 649 NWIGSCCSSPAGVTTCCTS 705
N IG ++P VT CC+S
Sbjct: 8 NKIGKSYTTPCMVTGCCSS 26
>BC104819-1|AAI04820.1| 148|Homo sapiens hypothetical protein
FLJ12331 protein.
Length = 148
Score = 26.6 bits (56), Expect(2) = 6.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 679 AGVTTCCTSARGCCVT 726
AG+ C TSARGC T
Sbjct: 53 AGIDNCYTSARGCTAT 68
Score = 22.6 bits (46), Expect(2) = 6.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 649 NWIGSCCSSPAGVTTCCTS 705
N IG ++P VT CC+S
Sbjct: 8 NKIGKSYTTPCMVTGCCSS 26
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,274,815
Number of Sequences: 237096
Number of extensions: 1412441
Number of successful extensions: 3243
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3234
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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