Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l16
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    31   0.26 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   7.3  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    26   7.3  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 15/48 (31%), Positives = 31/48 (64%)
 Frame = -2

Query: 629 GRFVSS*HSSTLDTKNTMNLKYIYY*MTFVMLCNVLNVTKIMNTRSSS 486
           G ++++ + STL   +T+ + Y+Y     V LCN+++ + I+NT++ S
Sbjct: 280 GEYLTNLYMSTLPHSSTVAIMYVYSWTGTVSLCNLVS-SWILNTKTHS 326


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +2

Query: 368 VSHDTTHRFFIFIISHVPFTCQIKNSQVKLASGFLT*VCRSYYEYSLFWLHLEHYI 535
           ++H     +FI I+    F    KNS  +L   +     + ++ + +F L  E Y+
Sbjct: 431 LNHSNAQSYFIGILDIAGFEIFEKNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYM 486


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 703 YTMLFLHCFCARVTYVFSKI--KL*TSDDSYPP 611
           YT LF  C C  V + F+K+   +  SD SY P
Sbjct: 466 YTSLFNICDCPCVVFPFTKVDANIDLSDVSYKP 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,487
Number of Sequences: 5004
Number of extensions: 65186
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)