Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l13
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 225 2e-60
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 225 2e-60
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 39 4e-04
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 2.5
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 3.4
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 4.5
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 4.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 5.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 5.9
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 5.9
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 225 bits (551), Expect = 2e-60
Identities = 104/138 (75%), Positives = 120/138 (86%)
Frame = -1
Query: 416 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 237
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 57
EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 56 RGMRHYWGLRVRGQHTKT 3
RG+RH LRVRGQHTKT
Sbjct: 121 RGLRHALDLRVRGQHTKT 138
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 225 bits (551), Expect = 2e-60
Identities = 104/138 (75%), Positives = 120/138 (86%)
Frame = -1
Query: 416 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 237
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 57
EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 56 RGMRHYWGLRVRGQHTKT 3
RG+RH LRVRGQHTKT
Sbjct: 121 RGLRHALDLRVRGQHTKT 138
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 38.7 bits (86), Expect = 4e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = -1
Query: 89 DLERLKKIRAHRGMRHYWGLRVRGQHTKT 3
D+ RL IR +RGMRH GL V GQ+T+T
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQNTRT 104
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 204 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 314
+++D F+ F C F+ + G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 86 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 187
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 353 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 261
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 4.5
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -1
Query: 263 LDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 84
L+ A TEE II+ N QY IP+ F+ +K+ + + +S +SK D
Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162
Query: 83 ERLKKIR 63
++ R
Sbjct: 163 SNRRESR 169
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 217 IFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITFRLPSMF 363
I SSS S A + +S+FL+ +L+ + TP N + + S F
Sbjct: 274 ICCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSDMNWAYIIASFF 322
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 5.9
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -1
Query: 284 LKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 105
L+K D L+ R+ ++ +E+ + ++ IP+ ++ +D + +L ++ D
Sbjct: 974 LRKLDGVLEARSKRLSQ--LEERVKLLGAGSTSSIPNSPRASKRVSLDSEDKKLVPASPD 1031
Query: 104 -SKLREDLERLKKIRAHRGMRHYWGLRVR 21
S ++ + LK R GM H W LR+R
Sbjct: 1032 KSAVQRGITALK--RDAEGMSHIWQLRLR 1058
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 187 YCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 306
YC F + + + V+SP ++ M+ F+R +L YL+
Sbjct: 58 YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,141
Number of Sequences: 5004
Number of extensions: 43900
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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