Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l13
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 222 1e-58
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 211 2e-55
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 209 8e-55
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 94 4e-20
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 42 3e-04
03_01_0404 + 3138624-3140096 31 0.47
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 4.4
03_01_0646 + 4742398-4742994,4743681-4744085 27 5.8
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 27 7.7
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084 27 7.7
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318... 27 7.7
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 7.7
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 222 bits (542), Expect = 1e-58
Identities = 93/132 (70%), Positives = 121/132 (91%)
Frame = -1
Query: 398 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 219
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 218 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 39
++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 38 WGLRVRGQHTKT 3
WGLRVRGQHTKT
Sbjct: 123 WGLRVRGQHTKT 134
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 211 bits (515), Expect = 2e-55
Identities = 97/154 (62%), Positives = 125/154 (81%), Gaps = 16/154 (10%)
Frame = -1
Query: 416 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 252
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 251 -----------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 105
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 104 SKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 3
KLR+DLERLKKIR HRG+RHYWGLRVRGQHTKT
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKT 154
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 209 bits (511), Expect = 8e-55
Identities = 97/156 (62%), Positives = 125/156 (80%), Gaps = 18/156 (11%)
Frame = -1
Query: 416 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 252
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 251 -------------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 111
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 110 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 3
LD KLR+DLERLKKIR HRG+RHYWGLRVRGQHTKT
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKT 156
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 94.3 bits (224), Expect = 4e-20
Identities = 42/58 (72%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
Frame = -1
Query: 173 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 3
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQHTKT
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKT 64
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = -1
Query: 95 REDLERLKKIRAHRGMRHYWGLRVRGQHTK 6
R +ERLK+IR +RG+RH GL VRGQ TK
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQRTK 137
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -1
Query: 143 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 45
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 271 SAFLRTMLEYLRPTPLIAVIANIT 342
S+FL TM EY+R P A +AN T
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKT 278
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 333 CDDGYQRCWPEVLQHCSQKSR 271
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 242 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGK-YSQLTSSNL 108
C EE ++ M P + + DW +N D+V+ + Y+++ + N+
Sbjct: 236 CNTEEDCALLASMLPPVEAALLDWAINLMADVVEHENYNKMNARNI 281
>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
Length = 156
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 163 FRNQSGILYCLGFDMIVIIFSTSSSVHSPARLS 261
F N YCLG +I ++++T+ RLS
Sbjct: 40 FDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLS 72
>03_01_0414 +
3183292-3183735,3184547-3184969,3185435-3185535,
3186178-3187439,3187625-3187665,3187777-3187845,
3187975-3188075,3188413-3188491,3188570-3188668,
3188757-3188825,3188918-3188967,3189211-3189387,
3189496-3189634
Length = 1017
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -1
Query: 455 VLCLGTLVR--NLTKMSLVIP-DKFQHILRIMNTNIDGKRKVMFAMTAIKGV 309
VL +G + R NL+ +S +P IL N ID KR++ A+ KG+
Sbjct: 793 VLFMGAVTRPPNLSIVSEYLPRGSLYKILHRPNCQIDEKRRIKMALDVAKGM 844
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -1
Query: 275 ADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS-- 102
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 101 KLREDLERLKK 69
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,623
Number of Sequences: 37544
Number of extensions: 276587
Number of successful extensions: 747
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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