Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l13
(473 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 228 2e-60
U50069-7|AAB37561.1| 913|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 27 6.9
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 27 6.9
U80032-2|AAM15555.1| 643|Caenorhabditis elegans Osmotic stress ... 27 9.1
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 27 9.1
AY360470-1|AAR12229.1| 643|Caenorhabditis elegans osmotic stres... 27 9.1
AL132862-6|CAB60535.2| 205|Caenorhabditis elegans Hypothetical ... 27 9.1
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 9.1
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 27 9.1
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 9.1
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 27 9.1
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 228 bits (557), Expect = 2e-60
Identities = 101/138 (73%), Positives = 122/138 (88%)
Frame = -1
Query: 416 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 237
MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ + +KAD+D++KRAGE T
Sbjct: 1 MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60
Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 57
EE+ +KI+TIM NP QYKIP+WFLNRQKDI DGK QL S+ +D+KLREDLER+KKIR H
Sbjct: 61 EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120
Query: 56 RGMRHYWGLRVRGQHTKT 3
RG+RHYWGLRVRGQHTKT
Sbjct: 121 RGLRHYWGLRVRGQHTKT 138
>U50069-7|AAB37561.1| 913|Caenorhabditis elegans Hypothetical
protein C09B9.7 protein.
Length = 913
Score = 27.9 bits (59), Expect = 3.9
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -1
Query: 212 TIMSNPRQYKIPDWFLNRQK-DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 36
+I NP + + LNR D KY SS+++ ++ DLE+LKKI + ++ Y
Sbjct: 111 SIRDNPVSQSLANILLNRDTAPYYDYKY---LSSDIELMVK-DLEKLKKINKEKTLKMY- 165
Query: 35 GLRVRG 18
GL G
Sbjct: 166 GLLAHG 171
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -1
Query: 200 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 84
NP YK+ D++ N+ +++ K + +L S++L K +++L
Sbjct: 40 NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 333 CDDGYQRCWPEVLQHCS 283
C + YQ CWP +L CS
Sbjct: 1512 CREYYQICWPPILLACS 1528
>U80032-2|AAM15555.1| 643|Caenorhabditis elegans Osmotic stress
resistant protein 1 protein.
Length = 643
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/86 (23%), Positives = 42/86 (48%)
Frame = -1
Query: 473 VLFVSPVLCLGTLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYS 294
+LF+ L LG + L+ S D +L + K + +M A++ +G ++
Sbjct: 2 ILFLFLFLLLGFCIAPLSAQSPSTSDAPGALLSSLVGKSHQKLPLAPSMEALELMGVQFV 61
Query: 293 NIVLKKADIDLDKRAGECTEEEVEKI 216
+ ++KK +++ K A + E +EK+
Sbjct: 62 DALIKKGQMEMAKGAFKTQLEVLEKV 87
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -1
Query: 416 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 237
+ L P Q I +NT +GK K + +IK N + KAD D DK G
Sbjct: 116 LDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIALLINSIYFKADWD-DKFDGMSV 174
Query: 236 EEE 228
E+
Sbjct: 175 SEQ 177
>AY360470-1|AAR12229.1| 643|Caenorhabditis elegans osmotic stress
resistance protein protein.
Length = 643
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/86 (23%), Positives = 42/86 (48%)
Frame = -1
Query: 473 VLFVSPVLCLGTLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYS 294
+LF+ L LG + L+ S D +L + K + +M A++ +G ++
Sbjct: 2 ILFLFLFLLLGFCIAPLSAQSPSTSDAPGALLSSLVGKSHQKLPLAPSMEALELMGVQFV 61
Query: 293 NIVLKKADIDLDKRAGECTEEEVEKI 216
+ ++KK +++ K A + E +EK+
Sbjct: 62 DALIKKGQMEMAKGAFKTQLEVLEKV 87
>AL132862-6|CAB60535.2| 205|Caenorhabditis elegans Hypothetical
protein Y73F8A.10 protein.
Length = 205
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = -2
Query: 418 KCRWSFQTNFNIFFVS*IRTSMAN------ERLCLR*RLSKVLAGGTPTLFSKKPTLI 263
KC S +FN F++ ++ S + E LC + + + LA G P++F+ P L+
Sbjct: 73 KCDCSSPNSFNTGFLNKLQVSEVSDDGCLYEILCAQNQPNSYLAAGPPSVFTLNPYLL 130
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -1
Query: 287 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 108
VLK+ I L KR + E+E K +T+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 107 DSKLREDLERLKKIR 63
D+ + + + KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -1
Query: 287 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 108
VLK+ I L KR + E+E K +T+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 107 DSKLREDLERLKKIR 63
D+ + + + KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -1
Query: 287 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 108
VLK+ I L KR + E+E K +T+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 107 DSKLREDLERLKKIR 63
D+ + + + KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -1
Query: 416 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 237
+ L P Q I +NT +GK K + +IK N + KAD D DK G
Sbjct: 116 LDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIALLINSIYFKADWD-DKFDGMSV 174
Query: 236 EEE 228
E+
Sbjct: 175 SEQ 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,568,267
Number of Sequences: 27780
Number of extensions: 245545
Number of successful extensions: 811
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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