Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l11
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   1.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   5.6  
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    23   7.3  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    23   7.3  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 44  YNKIVRAPIGEFCVKIFMHFYVFSH 118
           + +I  AP   F  K  +H+Y+F H
Sbjct: 225 FKEINNAPFPNFISKEILHYYLFIH 249


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = +2

Query: 83   VKIFMHFYVFSHAHF 127
            +++FM+FY FS++H+
Sbjct: 1729 LELFMNFYNFSNSHW 1743


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 50  KIVRAPIGEFCVKI 91
           K  R PIG+FC++I
Sbjct: 74  KQFRPPIGKFCIEI 87


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 121 SVAEYIEMHKNFNTKFADRCPND 53
           ++  Y E   NF TKF +  PN+
Sbjct: 328 NLCRYYEDFFNFQTKFLELFPNE 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,759
Number of Sequences: 5004
Number of extensions: 5376
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)