Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l11
         (130 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1040 + 25616967-25617276,25618042-25618163,25618397-256186...    25   8.5  
05_03_0596 - 16005622-16006122                                         25   8.5  

>12_02_1040 +
           25616967-25617276,25618042-25618163,25618397-25618623,
           25618708-25618885,25619054-25619197,25619448-25619669
          Length = 400

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 130 SEVSVAEYIE--MHKNFNTKFADRCPNDFIVINSKSWN 23
           S++S A++    +HKN   +  D CP+    I  + W+
Sbjct: 313 SDLSFADFSSFVVHKNLRPEIPDCCPSAMASIMRRCWD 350


>05_03_0596 - 16005622-16006122
          Length = 166

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 64  CPNDFIVINSKSWNNHENC 8
           CPND I+  S+ + N E C
Sbjct: 142 CPNDCILYRSEEYENLEAC 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,733
Number of Sequences: 37544
Number of extensions: 27707
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 23
effective length of database: 13,929,836
effective search space used: 264666884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)