Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l11
         (130 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    29   0.60 
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    29   0.60 
U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of ...    26   3.2  
AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative pota...    26   3.2  
AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical...    25   7.4  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    25   9.8  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    25   9.8  
AL021487-9|CAE18007.1|  118|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 11  IFMIIPTFRINYNKIVRAPIGEFCVKIFMHF 103
           IF ++  F+INY K +++P+  F   +F  F
Sbjct: 501 IFELLIFFKINYQKSIKSPVSVFSNYLFFGF 531


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 11  IFMIIPTFRINYNKIVRAPIGEFCVKIFMHF 103
           IF ++  F+INY K +++P+  F   +F  F
Sbjct: 390 IFELLIFFKINYQKSIKSPVSVFSNYLFFGF 420


>U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of
           potassium channelsprotein 26 protein.
          Length = 519

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHFYVF 112
           GRT+ MI  +  +    +V   IGE+  KI  + Y+F
Sbjct: 213 GRTLSMIYASIGLPIMLVVLGDIGEWFQKILTNGYIF 249


>AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative
           potassium channel subunitn2P26 protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHFYVF 112
           GRT+ MI  +  +    +V   IGE+  KI  + Y+F
Sbjct: 178 GRTLSMIYASIGLPIMLVVLGDIGEWFQKILTNGYIF 214


>AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical
           protein Y116A8C.21 protein.
          Length = 385

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 91  NFNTKFADRCPNDFIVINSKSWNNHENC 8
           N +     R  +DF  +   SWN+ ENC
Sbjct: 40  NMDLNSCVRIVSDFSTVILASWNSSENC 67


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 45   TIKSLGHRSANFVLKFLC 98
            ++K+LGH+   FVL F C
Sbjct: 1874 SVKALGHQLGRFVLVFNC 1891


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 45   TIKSLGHRSANFVLKFLC 98
            ++K+LGH+   FVL F C
Sbjct: 1874 SVKALGHQLGRFVLVFNC 1891


>AL021487-9|CAE18007.1|  118|Caenorhabditis elegans Hypothetical
          protein Y45F10B.15 protein.
          Length = 118

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 37 SKSWNNHENCS 5
          S+SWN+H NC+
Sbjct: 30 SESWNHHSNCT 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,767
Number of Sequences: 27780
Number of extensions: 31489
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,740,198
effective HSP length: 23
effective length of database: 12,101,258
effective search space used: 229923902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)