Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l11
         (130 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    19   7.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   7.2  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    19   7.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   7.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    19   7.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          18   9.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      18   9.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    18   9.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    18   9.6  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 7   NNFHDYSNF*N 39
           NN+++Y+N+ N
Sbjct: 332 NNYNNYNNYNN 342


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 31  SWNNHENCS 5
           SW N+++CS
Sbjct: 115 SWANYKDCS 123


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -1

Query: 67  RCPNDFIVINSKSWNNHENC 8
           RC +   V  SK W    +C
Sbjct: 56  RCSSYLQVSGSKIWQMERSC 75


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 31  SWNNHENCS 5
           SW N+++CS
Sbjct: 115 SWANYKDCS 123


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 45  TIKSLGHRSANFVLKFL 95
           T KSL HR ++ +LK L
Sbjct: 53  THKSLQHRGSSGMLKRL 69


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = -1

Query: 112 EYIEMHKNFNTKFADRCPNDFIVINSKSWNN 20
           +YI    N  ++ +    + +I+ N   W+N
Sbjct: 322 KYIREIMNKESRISAAIDSGYILNNDGKWHN 352


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = -1

Query: 112 EYIEMHKNFNTKFADRCPNDFIVINSKSWNN 20
           +YI    N  ++ +    + +I+ N   W+N
Sbjct: 322 KYIREIMNKESRISAAIDSGYILNNDGKWHN 352


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 31  SWNNHENCS 5
           SW  ++NCS
Sbjct: 112 SWAKNQNCS 120


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 31  SWNNHENCS 5
           +W  +ENCS
Sbjct: 109 TWAKNENCS 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,574
Number of Sequences: 438
Number of extensions: 366
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 23
effective length of database: 136,269
effective search space used:  2589111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)