Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l09
(483 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75547-8|CAA99898.1| 126|Caenorhabditis elegans Hypothetical pr... 64 4e-11
Z66565-5|CAA91482.2| 766|Caenorhabditis elegans Hypothetical pr... 31 0.33
U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe chro... 29 2.3
U53151-2|AAN73859.1| 385|Caenorhabditis elegans Serpentine rece... 28 4.1
Z81540-1|CAB04402.1| 186|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81497-8|CAC70080.1| 707|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z75953-7|CAB00101.2| 707|Caenorhabditis elegans Hypothetical pr... 27 5.4
U00181-1|AAA18259.1| 707|Caenorhabditis elegans protein kinase ... 27 5.4
AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical ... 27 5.4
Z22180-5|CAA80174.2| 717|Caenorhabditis elegans Hypothetical pr... 27 7.1
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 27 9.4
AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein... 27 9.4
AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal chem... 27 9.4
>Z75547-8|CAA99898.1| 126|Caenorhabditis elegans Hypothetical
protein R11D1.8 protein.
Length = 126
Score = 64.5 bits (150), Expect = 4e-11
Identities = 47/123 (38%), Positives = 67/123 (54%)
Frame = -1
Query: 414 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 235
MS +L W +IRNN+AFL +R I K FS E N+ ++S +Y+GL +K A+ V + K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58
Query: 234 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 55
G V K K +PAK + ++ + V+RL K N K RRA+AI+
Sbjct: 59 GVVVSTKNEKG--RPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112
Query: 54 RSQ 46
RSQ
Sbjct: 113 RSQ 115
>Z66565-5|CAA91482.2| 766|Caenorhabditis elegans Hypothetical
protein T04F8.6 protein.
Length = 766
Score = 31.5 bits (68), Expect = 0.33
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -3
Query: 460 CEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQC 314
CEH+ + I R+N+++ ELD + QQ I EA Y +++ E+C
Sbjct: 275 CEHMQKQIHIANQRRNMLIEELDQN--QQSI---EASYNNRLKEMEERC 318
>U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe
chromosome segregationprotein) homolog protein 1
protein.
Length = 307
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 107 TTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQP 6
+T T R P ++ PSS P GPSK + P P
Sbjct: 213 STIPTNRRAPMLIA-PSSTPAGPSKPTARKPPTP 245
>U53151-2|AAN73859.1| 385|Caenorhabditis elegans Serpentine
receptor, class r protein10 protein.
Length = 385
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 317 LFGSLLNGFLILRFFTRNALLLRMIIQFS 403
L SL+NG I FF N LL +I+ F+
Sbjct: 255 LLWSLINGIYITSFFNSNPLLYSIILGFN 283
>Z81540-1|CAB04402.1| 186|Caenorhabditis elegans Hypothetical
protein F46B3.1 protein.
Length = 186
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 403 TELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDS 275
++ +D Q PCE QYQK + C PP + V + D+
Sbjct: 59 SDTNDECQLDMSPCETDQYQKICPKTCNVC--PPAICVDQWDN 99
>Z81497-8|CAC70080.1| 707|Caenorhabditis elegans Hypothetical
protein F57F5.5 protein.
Length = 707
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 333 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 217
SK P ++H F + ++ K + G V +RKG VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404
>Z75953-7|CAB00101.2| 707|Caenorhabditis elegans Hypothetical
protein F57F5.5 protein.
Length = 707
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 333 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 217
SK P ++H F + ++ K + G V +RKG VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404
>U00181-1|AAA18259.1| 707|Caenorhabditis elegans protein kinase C
protein.
Length = 707
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 333 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 217
SK P ++H F + ++ K + G V +RKG VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404
>AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical
protein T22D1.4 protein.
Length = 586
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 229 ESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFDIALLHK 366
E+ PV+V ++ N V +V +EVSH + E I L+HK
Sbjct: 192 ETKPVKVHYENNSPFVIATIVERFIEVSHWGNIAVEEY--IELVHK 235
>Z22180-5|CAA80174.2| 717|Caenorhabditis elegans Hypothetical
protein K11H3.4 protein.
Length = 717
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 341 FLILRFFTRNALLLRMIIQFSDDDIFTV*TYFYT 442
+L +RFF N L+ M ++ DDDI T FYT
Sbjct: 372 YLTIRFFFENFLIYPMEMEDIDDDI----TVFYT 401
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -3
Query: 406 VTELDDHPQQQCIP-CEEAQYQKAVQQGAEQCD*PPLLQVQRLDS--QESRWCR 254
V + + H +C P C++A Q QQ A QC P Q Q+ S Q+++ C+
Sbjct: 197 VQQCNQHCNLECQPTCQQAVSQ-CQQQCAPQCQQPSAPQCQQCQSSCQQTQQCQ 249
>AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein
protein.
Length = 760
Score = 26.6 bits (56), Expect = 9.4
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Frame = +1
Query: 157 SLEWTAD*VFSGLSGSLCFLVHYCESLPVRVLHDTNGFLVNQAVVPE----GVEVSHIVR 324
+L W+ D + G+ LV + + R+ ++ + Q V E EVS
Sbjct: 272 ALSWSPDGTQLAV-GTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRDVSSEVSRETL 330
Query: 325 LLAERLFDIALLHKECIVVADDHPVQ*RRHFYGLNLFLHQTQRAHNVCVDKKK 483
ER+ IA+L+K IVV H + + +R N+ V +K
Sbjct: 331 ETKERISKIAILYKYLIVVTSSHIYIYSSKNWNTPTMIEYNERTVNIIVQCEK 383
>AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal
chemotaxis protein 2 protein.
Length = 760
Score = 26.6 bits (56), Expect = 9.4
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Frame = +1
Query: 157 SLEWTAD*VFSGLSGSLCFLVHYCESLPVRVLHDTNGFLVNQAVVPE----GVEVSHIVR 324
+L W+ D + G+ LV + + R+ ++ + Q V E EVS
Sbjct: 272 ALSWSPDGTQLAV-GTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRDVSSEVSRETL 330
Query: 325 LLAERLFDIALLHKECIVVADDHPVQ*RRHFYGLNLFLHQTQRAHNVCVDKKK 483
ER+ IA+L+K IVV H + + +R N+ V +K
Sbjct: 331 ETKERISKIAILYKYLIVVTSSHIYIYSSKNWNTPTMIEYNERTVNIIVQCEK 383
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,303,663
Number of Sequences: 27780
Number of extensions: 236773
Number of successful extensions: 618
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -