Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17l04
         (155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823           87   2e-18
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...    82   5e-17
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           57   2e-09
12_02_0312 + 17395716-17398112                                         26   3.6  
04_04_1420 + 33441260-33443704                                         26   3.6  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 39/51 (76%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
 Frame = -2

Query: 154 PRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 5
           PRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LG
Sbjct: 77  PRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score = 82.2 bits (194), Expect = 5e-17
 Identities = 38/50 (76%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
 Frame = -2

Query: 154 PRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 8
           PRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 77  PRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 23/50 (46%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = -2

Query: 151 RFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 5
           R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG++LG
Sbjct: 77  RQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLG 126


>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 136 INDIERWTNLLPSRQFGYLVLTTS 65
           IND E   NLLPS + G ++L T+
Sbjct: 280 INDWEELMNLLPSGRSGSMILITT 303


>04_04_1420 + 33441260-33443704
          Length = 814

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 101 LTTVWLPSPYNKWW 60
           +++ + PSP+NKWW
Sbjct: 202 ISSNYWPSPFNKWW 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,608,923
Number of Sequences: 37544
Number of extensions: 71150
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)