Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17l04
(155 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor p... 20 2.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 20 3.2
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 19 4.3
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 19 4.3
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 19 5.6
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 19 5.6
AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein. 19 7.4
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 19 7.4
AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein. 19 7.4
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 19 7.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 18 9.8
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 18 9.8
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 18 9.8
>DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor
protein.
Length = 128
Score = 20.2 bits (40), Expect = 2.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 129 ILKDGLICSPHDSL 88
+L DGL+C DS+
Sbjct: 70 LLSDGLMCVEKDSI 83
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength
rhodopsin protein.
Length = 377
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +3
Query: 9 KIFPPRCFLLASSWSMMPPL 68
K+ P L+ ++W PPL
Sbjct: 28 KVPPDMLHLIDANWYQYPPL 47
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Frame = -1
Query: 77 PYNKWWHHGP*RSQKKTPWRKNFRL 3
P + W KTPW K +++
Sbjct: 192 PISGWHGDNMLEPSPKTPWYKGWKV 216
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 19.4 bits (38), Expect = 4.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 30 FLLASSWSMMPPLVV 74
+ LASSW + PL +
Sbjct: 434 YSLASSWPALVPLAL 448
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 19.0 bits (37), Expect = 5.6
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = -3
Query: 78 SLQQVVASWTMKKPE 34
S++ + WT ++PE
Sbjct: 479 SIRGAIQQWTCRQPE 493
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 19.0 bits (37), Expect = 5.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 17 SSKVFSSGFFMVHDATTC 70
S VFS G F++ D C
Sbjct: 597 SLMVFSLGLFLLLDMFNC 614
>AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein.
Length = 136
Score = 18.6 bits (36), Expect = 7.4
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 116 PSFNIVDGNIKTR 154
P+F +V N+K R
Sbjct: 2 PNFRVVGDNLKDR 14
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 18.6 bits (36), Expect = 7.4
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +2
Query: 104 EQISPSFNIVDG 139
E + P FN+ DG
Sbjct: 440 EILCPHFNVTDG 451
>AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein.
Length = 135
Score = 18.6 bits (36), Expect = 7.4
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 116 PSFNIVDGNIKTR 154
P+F +V N+K R
Sbjct: 3 PNFRVVGDNLKDR 15
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -1
Query: 104 PLTTVWLPSPYNKWWHH 54
P T +LP Y+ HH
Sbjct: 306 PSTAGFLPPSYHPHQHH 322
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 18.2 bits (35), Expect = 9.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 120 DGLICSPHDSLVT*SLQQVVASWTMKKP 37
D ICS ++ + Q +V W M P
Sbjct: 142 DTQICSMMIESLSHTTQDLVFIWNMTDP 169
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 18.2 bits (35), Expect = 9.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 9 KIFPPRCFLLASSW 50
+I+ P C L+ SW
Sbjct: 247 QIYIPCCMLVIVSW 260
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 18.2 bits (35), Expect = 9.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 9 KIFPPRCFLLASSW 50
+I+ P C L+ SW
Sbjct: 247 QIYIPCCMLVIVSW 260
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,349
Number of Sequences: 438
Number of extensions: 664
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used: 2655300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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