Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k22
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 90 4e-19
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 40 4e-04
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 40 4e-04
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 30 0.42
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 28 1.3
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 2.2
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 2.2
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 27 3.0
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 26 5.2
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 6.9
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 9.1
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 25 9.1
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 89.8 bits (213), Expect = 4e-19
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
Frame = -1
Query: 771 RHIQSLILDNDIELLDCPGLVLPAYAVAP-DLLLTAVLPIDQMRSHDAAMARLCQLVSKF 595
+H Q++ L + LLDCPGLV P++A DL+L VLPIDQ+R + A + + + K
Sbjct: 337 KHFQTINLSEKVSLLDCPGLVFPSFATTQADLVLDGVLPIDQLREYTGPSALMAERIPKE 396
Query: 594 TFEQKYGLLL---PRTDDADELDYKQ-ILTAHAYNRGFMTAA-GQPDRSRSARLLLKDAA 430
E Y + + P + + Q +L A +RGFM A G PD SR+AR+LLKD
Sbjct: 397 VLETLYTIRIRIKPIEEGGTGVPSAQEVLFPFARSRGFMRAHHGTPDDSRAARILLKDYV 456
Query: 429 SGRLRWEQLPPGY 391
+G+L + PP Y
Sbjct: 457 NGKLLYVHPPPNY 469
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 39.9 bits (89), Expect = 4e-04
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Frame = -1
Query: 762 QSLILDNDIELLDCPGLVLPAYAVAP-DLLLTAVLPIDQMRSHDAAMARLCQLVSKFTFE 586
Q + L I L+DCPG+V P+ + +LLL V+ ++ + + +A + + E
Sbjct: 349 QYVALMKRIFLIDCPGIVPPSSNDSDAELLLKGVVRVENVSNPEAYIPTVLSRCKVKHLE 408
Query: 585 QKYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASGRLRWEQ 406
+ Y + + D + L A G + G+PD + A+++L D G++ W
Sbjct: 409 RTYEI-------SGWNDSTEFLAKLAKKGGRLLKGGEPDEASVAKMVLNDFMRGKIPWFI 461
Query: 405 LPPG 394
P G
Sbjct: 462 GPKG 465
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 39.9 bits (89), Expect = 4e-04
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Frame = -1
Query: 765 IQSLILDNDIELLDCPGLVLPAYAVAPDLLLTAVL-PIDQMRSHD--AAMARLCQLVSKF 595
++ + LDN + L+D PG+V P+ DL +L + + D A + + Q +S+
Sbjct: 313 LREVKLDNKLRLVDSPGIVFPSSDSKDDLYRLVMLNAVSSTKVDDPVAVASYILQFLSRV 372
Query: 594 TFE-----QKYGL-LLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDA 433
+ Q+Y L L T D D L A RG + G P+ + +A +++ D
Sbjct: 373 PGQLERMFQRYELPPLLNTSDIDTA--TDFLVNIARKRGRLGRGGIPNLNAAANIVINDW 430
Query: 432 ASGRLRW 412
+GR+ W
Sbjct: 431 HAGRIEW 437
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 29.9 bits (64), Expect = 0.42
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 578 YFCSNVNLLTSWHSLAIAASWERIWSIGN 664
+FC +V L W S SW +W IGN
Sbjct: 2200 WFCISVFLQNFWLSSLNGRSWSYLWDIGN 2228
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +2
Query: 215 TPIIGFPLTCAVLFFI---AKKALSISSDLFRQPSTILASMGVG 337
T I+G L AV FF KK+LS P T+LA +G G
Sbjct: 71 TVIVGNSLKAAVRFFAFDSIKKSLSDEHGHLTGPRTVLAGLGAG 114
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 199 SRETGNQTVEAREETRQQKQTREAKKSIRPSG 104
S +T + +EE ++T E+KKSI P+G
Sbjct: 249 SIQTAPSFPKEKEEKENTEETEESKKSINPTG 280
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 252 STAHVKGKPIIGVTGAQSAERQVTKPWKQEKKHANKNKREKLRR 121
S+ ++ G + + ++ E KP K+EKK + K+EK ++
Sbjct: 433 SSVNIDGDEEVDIDVEETVETISEKPSKKEKKDKKEKKKEKSKK 476
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3
Query: 283 DRQRFLRYEEKYSAR*RKTYYRSYRCSISRETGNQTVEAREETRQQKQTREAKKSIRPS 107
D + Y+ +YS + +SYR SR T +Q+V A T+ +T + K S + S
Sbjct: 150 DSSQLPTYKTEYSETTKFPLGKSYRPKASRTTSSQSV-ASTMTKSSTKTSKKKSSKKNS 207
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Frame = +2
Query: 626 IAASWERIWSIGNTA----VSSKSGATAYAGNT-----NPGQSNSS----MSLSRINDCM 766
I W IW+IGN +++ G Y+ N+ P QS+ S + R+N C+
Sbjct: 338 IPGFWPGIWTIGNLVRPGYLATSDGVWPYSYNSCDAGITPNQSDPSGISYLGGQRLNQCV 397
Query: 767 C 769
C
Sbjct: 398 C 398
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 765 IQSLILDNDIELLDCPGLVLPAYAVAPDLL 676
I L D D+ +LD PG++ P+ D+L
Sbjct: 191 IVRLFNDMDVYMLDTPGIMTPSITKPEDML 220
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 762 QSLILDNDIELLDCPGLVLPAYAVAPDLLLTAV 664
Q LI+DN +LL L+ P+Y + P LL+ +
Sbjct: 327 QQLIIDNQNQLLKVANLLEPSYEL-PALLIKPI 358
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 513 HAYNRGFMTAAGQPDRSRSARLLLKDAASGRLRWEQL 403
H YN +T +G P+RS +L + ++ R+ W +L
Sbjct: 132 HFYNED-VTRSGHPNRSIYTQLPRNEFSNARVLWNRL 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,836
Number of Sequences: 5004
Number of extensions: 50608
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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