Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k22
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 89 3e-18
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 89 4e-18
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 40 0.002
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 34 0.14
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609... 32 0.58
03_05_0894 + 28571015-28571391,28571651-28571768,28572069-285723... 30 2.4
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620... 30 2.4
01_06_1070 - 34286660-34287380,34288020-34288094,34288534-342886... 29 3.1
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917... 29 3.1
12_02_0724 + 22541409-22541605,22542850-22542922,22543019-225430... 28 7.2
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 9.5
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 89.4 bits (212), Expect = 3e-18
Identities = 45/131 (34%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Frame = -1
Query: 771 RHIQSLILDNDIELLDCPGLVLPAYAVAP-DLLLTAVLPIDQMRSHDAAMARLCQLVSKF 595
+H Q+L++ ++ L DCPGLV P+++ + +++ VLPID+M H A+ + V +
Sbjct: 366 KHFQTLVISEELILCDCPGLVFPSFSSSRHEMVACGVLPIDRMTKHRGAIQVVANRVPRN 425
Query: 594 TFEQKYGLLLPRTDDADELDYK----QILTAHAYNRGFMTAAGQPDRSRSARLLLKDAAS 427
EQ Y + LP+ ++L ++L A+ +RG ++ AG PD +R+AR +LKD
Sbjct: 426 VLEQIYKITLPKPKAYEQLSRPPTAAELLRAYCTSRGHVSHAGLPDETRAARQILKDYLD 485
Query: 426 GRLRWEQLPPG 394
G++ +LPPG
Sbjct: 486 GKIPHFELPPG 496
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 89.0 bits (211), Expect = 4e-18
Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 5/222 (2%)
Frame = -1
Query: 771 RHIQSLILDNDIELLDCPGLVLPAYAVAP-DLLLTAVLPIDQMRSHDAAMARLCQLVSKF 595
+H Q+LI+ ++ L DCPGLV P+++ + +++ VLPID+M H A+ + V +
Sbjct: 349 KHFQTLIISEELTLCDCPGLVFPSFSSSRHEMVSCGVLPIDRMTKHREAIQVVADRVPRS 408
Query: 594 TFEQKYGLLLPRTDDADELDYK----QILTAHAYNRGFMTAAGQPDRSRSARLLLKDAAS 427
EQ Y + LP+ + ++L A+ +RG ++ AG PD +R+AR +LKD
Sbjct: 409 VLEQIYKITLPKPKPYESQSRPPTAAELLRAYCASRGHVSHAGLPDETRAARQILKDYID 468
Query: 426 GRLRWEQLPPGYQPAPLEQLIEDRRNEKRKPTPMEARMVEGWRNKSEEIDSAFFAMKKST 247
G++ +LPPG + D NE + + +E + N+S DS
Sbjct: 469 GKIPHFELPPG---------MVDTENEHEETSGLEGPTTSAY-NESGGSDSDERDDTVDP 518
Query: 246 AHVKGKPIIGVTGAQSAERQVTKPWKQEKKHANKNKREKLRR 121
A + ++ + + +KP ++KK A+ + +K +R
Sbjct: 519 AQPDMRHVLSDLESFDLATEGSKPAGKKKKEASHKQHKKPQR 560
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/122 (22%), Positives = 54/122 (44%)
Frame = -1
Query: 762 QSLILDNDIELLDCPGLVLPAYAVAPDLLLTAVLPIDQMRSHDAAMARLCQLVSKFTFEQ 583
Q + L I L+DCPG+V D++L V+ + + + + + V K ++
Sbjct: 355 QYITLTKRIFLIDCPGVVYQNNDSETDIVLKGVVRVTNLADASEHIGEVLRRVKKEHLKR 414
Query: 582 KYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASGRLRWEQL 403
Y + D +D L + G + G+PD + +A+++L D G++ +
Sbjct: 415 AYKI-------EDWVDDNDFLVQLSKTTGKLLRGGEPDLTTTAKMVLHDWQRGKIPFFVP 467
Query: 402 PP 397
PP
Sbjct: 468 PP 469
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 33.9 bits (74), Expect = 0.14
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = -1
Query: 771 RHIQSLILDNDIELLDCPGLV-LPAYAVAPDLLLTAVLPIDQMRSHDAAMARLCQLVSKF 595
R +Q + LD ++LLDCPG+V L + + L +++M + + + L
Sbjct: 304 RSMQEVQLDKKVKLLDCPGVVMLKSSNSGVSVALRNCKRVEKMEDPISPVKEILDLCP-- 361
Query: 594 TFEQKYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASGRLR 415
+K L L R +D L A RG + G D +AR++L D G++
Sbjct: 362 --HEKL-LSLYRVPTFTSVD--DFLQKVATLRGKLKKGGIVDVEAAARIVLHDWNEGKIP 416
Query: 414 WEQLPP 397
+ +PP
Sbjct: 417 YFTVPP 422
>07_01_1104 -
10160493-10160599,10160632-10160637,10160930-10160975,
10161053-10161190,10161275-10161679,10163193-10163330,
10163401-10163482,10163596-10163943,10164294-10164655,
10165154-10165209,10166428-10166558,10166564-10166628,
10169191-10169631
Length = 774
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = -1
Query: 282 IDSAFFAMKKSTAHVKGKPIIGVTGAQSAERQVTKPWKQEKKHANKNKREKLRR 121
+ + +F+++K H+K K A+ AER+ + K+ KKH + +RE+ RR
Sbjct: 224 VTTNWFSVEKELKHIKEK---AEKEAKRAEREKAEQKKRSKKHQEEVEREQKRR 274
>03_05_0894 +
28571015-28571391,28571651-28571768,28572069-28572376,
28572452-28572583,28572672-28572770,28572950-28573487
Length = 523
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = -1
Query: 366 IEDRRNEKRKPTPMEARMVEGWRNKSE---EIDSAFFAMKKSTAHVKGKPIIGVTGAQSA 196
I+ RR + P+ + W ++ E D +KK ++ PIIG A S
Sbjct: 395 IQSRRQILQNKAPLSDEDSDFWSSEEEGAYHSDKNIPPIKKDYKFLESFPIIGGRTAMSQ 454
Query: 195 ERQVTKPWKQEKKHANK 145
+ + WK E NK
Sbjct: 455 DPLEREKWKDEMSRRNK 471
>01_06_1254 +
35761046-35761162,35761332-35761416,35761877-35762017,
35762118-35762206,35762519-35762701,35763509-35763697,
35763808-35763938,35764023-35764125,35765123-35765308
Length = 407
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 378 LEQLIEDRRNEKRKPTPMEARMVEGW-RNKSEEIDSAFFAMKKSTA 244
+E IED+R + + TPM + W R K+EE ++ A++ A
Sbjct: 261 IEDEIEDQRKKVKTTTPMTTDLFMEWKRKKAEEREAGLAALRAERA 306
>01_06_1070 -
34286660-34287380,34288020-34288094,34288534-34288636,
34288866-34289091
Length = 374
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 579 YGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASG 424
+ +LLP T + + AH+ NRG P R R R + +D A+G
Sbjct: 51 FAVLLPLTLRLETGPHNAATHAHSQNRGVAEQGRPPGRRRCGRGVRRDTAAG 102
>01_05_0749 +
24890944-24891146,24891414-24891535,24891633-24891721,
24891813-24891848,24892268-24892367,24892524-24892566,
24892645-24892739,24892978-24893036,24893114-24893613,
24893691-24893772,24893864-24894429,24894520-24894655,
24894750-24894812,24894942-24895172,24895282-24895395
Length = 812
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 199 SRETGNQTVEAREETRQQKQTREAKKSIRPS 107
S + G TVEA++ET E +K IRP+
Sbjct: 427 SNDLGKDTVEAKDETEMVVPDNEYEKKIRPT 457
>12_02_0724 +
22541409-22541605,22542850-22542922,22543019-22543081,
22543598-22543654,22543909-22544001
Length = 160
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 434 PPADASGGSSCRRDTSRLPSNSS*KTGGTRR 342
PPA A+ SS DTS S+SS +G RR
Sbjct: 4 PPAAATSSSSSYTDTSGSSSDSSSSSGSDRR 34
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 614 HSLAIAASWERIWSIGNTAVSSKSGATAYAG 706
H L +A +W R WS G ++ A AG
Sbjct: 245 HKLPLAQTWVRCWSCGGGGEDTEKAALTTAG 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,279,383
Number of Sequences: 37544
Number of extensions: 386509
Number of successful extensions: 1466
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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