Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k22
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 124 9e-29
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 124 9e-29
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 52 5e-07
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 41 8e-04
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 41 8e-04
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 41 8e-04
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 37 0.014
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 30 2.1
AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical... 30 2.1
AF039716-5|AAB96740.1| 488|Caenorhabditis elegans Hypothetical ... 29 2.8
Z81077-4|CAB03071.3| 618|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 29 3.7
AF078789-1|AAK21515.1| 392|Caenorhabditis elegans Hypothetical ... 28 8.5
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 124 bits (298), Expect = 9e-29
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 6/225 (2%)
Frame = -1
Query: 771 RHIQSLILDNDIELLDCPGLVLPAYAVA-PDLLLTAVLPIDQMRSHDAAMARLCQLVSKF 595
RH Q++ +D+ + L DCPGLV+P+++ ++ L +LP+DQMR H + L V
Sbjct: 165 RHFQTIHIDSQLCLCDCPGLVMPSFSFGRSEMFLNGILPVDQMRDHFGPTSLLLSRVPVH 224
Query: 594 TFEQKYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASGRLR 415
E Y ++LP ++ +L + A+ RGFM ++G PD SR+ARL+ KD SG+L
Sbjct: 225 VIEATYSIMLPEMQSPSAIN---LLNSLAFMRGFMASSGIPDCSRAARLMFKDVVSGKLI 281
Query: 414 WEQLPPGYQPAPLEQL-IEDRRNEKRKPTPME----ARMVEGWRNKSEEIDSAFFAMKKS 250
W PPG + +++ D++ ME +++EG K + DS F
Sbjct: 282 WAAAPPGVEQEEFDRISYPDKKTRDIGRVQMEKLAKLQLLEGDELKGSQFDSQHFVGSIG 341
Query: 249 TAHVKGKPIIGVTGAQSAERQVTKPWKQEKKHANKNKREKLRRVY 115
AHV+ + T T P + K K K++KLRR+Y
Sbjct: 342 VAHVRDSKALPQTLGTVIP---TAPTENNGKKHYKGKKDKLRRIY 383
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 124 bits (298), Expect = 9e-29
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 6/225 (2%)
Frame = -1
Query: 771 RHIQSLILDNDIELLDCPGLVLPAYAVA-PDLLLTAVLPIDQMRSHDAAMARLCQLVSKF 595
RH Q++ +D+ + L DCPGLV+P+++ ++ L +LP+DQMR H + L V
Sbjct: 334 RHFQTIHIDSQLCLCDCPGLVMPSFSFGRSEMFLNGILPVDQMRDHFGPTSLLLSRVPVH 393
Query: 594 TFEQKYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASGRLR 415
E Y ++LP ++ +L + A+ RGFM ++G PD SR+ARL+ KD SG+L
Sbjct: 394 VIEATYSIMLPEMQSPSAIN---LLNSLAFMRGFMASSGIPDCSRAARLMFKDVVSGKLI 450
Query: 414 WEQLPPGYQPAPLEQL-IEDRRNEKRKPTPME----ARMVEGWRNKSEEIDSAFFAMKKS 250
W PPG + +++ D++ ME +++EG K + DS F
Sbjct: 451 WAAAPPGVEQEEFDRISYPDKKTRDIGRVQMEKLAKLQLLEGDELKGSQFDSQHFVGSIG 510
Query: 249 TAHVKGKPIIGVTGAQSAERQVTKPWKQEKKHANKNKREKLRRVY 115
AHV+ + T T P + K K K++KLRR+Y
Sbjct: 511 VAHVRDSKALPQTLGTVIP---TAPTENNGKKHYKGKKDKLRRIY 552
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/46 (43%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Frame = -1
Query: 771 RHIQSLILDNDIELLDCPGLVLPAYAVA-PDLLLTAVLPIDQMRSH 637
RH Q++ +D+ + L DCPGLV+P+++ ++ L +LP+DQMR H
Sbjct: 165 RHFQTIHIDSQLCLCDCPGLVMPSFSFGRSEMFLNGILPVDQMRDH 210
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 43.2 bits (97), Expect = 2e-04
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Frame = -1
Query: 771 RHIQSLILDNDIELLDCPGLVLPAYA-VAP-DLLLTAVLPIDQMRSHDAAMARLCQLVSK 598
+ IQ + LD +I L+D PG++L + + P ++ L + +D + A + + + SK
Sbjct: 295 KEIQEVELDKNIRLIDSPGVILVSQKDLDPIEVALKNAIRVDNLLDPIAPVHAILRRCSK 354
Query: 597 FTFEQKYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASGRL 418
T Y L D + +D Q L A G + +PD + +A+ +L D +G+L
Sbjct: 355 ETIMLHYNLA-----DFNSVD--QFLAQLARRIGKLRRGARPDVNAAAKRVLNDWNTGKL 407
Query: 417 RWEQLPP 397
R+ PP
Sbjct: 408 RYYTHPP 414
>AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 41.1 bits (92), Expect = 8e-04
Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
Frame = -1
Query: 762 QSLILDNDIELLDCPGLVLPAYAVAPDLLLTAVLPIDQMRSHDAAMARLCQLVSKFTFEQ 583
Q ++L I L+D PG+V P ++L V+ ++ ++ + + + +
Sbjct: 364 QYVMLMRRIYLIDSPGVVYPQGDSETQIILKGVVRVENVKDPENHVQGVLDRCKPEHLRR 423
Query: 582 KYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASGRLRWEQL 403
+YG+ P D D+ LT A +G + G PD ++++L + G+L +
Sbjct: 424 QYGI--PEFTDVDDF-----LTKIAIKQGRLLKGGDPDIVAVSKVVLNEFQRGKLPYFVP 476
Query: 402 PPG--------YQPAPLEQLIEDRRNEKRKPTPMEARMVEGWRNKSEEID 277
PPG + AP+ ++ D ++++ P + + + RN + D
Sbjct: 477 PPGCEERAKKDFSQAPINEMCAD--DDEQLPLDAQLELDDVARNGGPDED 524
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 41.1 bits (92), Expect = 8e-04
Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
Frame = -1
Query: 762 QSLILDNDIELLDCPGLVLPAYAVAPDLLLTAVLPIDQMRSHDAAMARLCQLVSKFTFEQ 583
Q ++L I L+D PG+V P ++L V+ ++ ++ + + + +
Sbjct: 305 QYVMLMRRIYLIDSPGVVYPQGDSETQIILKGVVRVENVKDPENHVQGVLDRCKPEHLRR 364
Query: 582 KYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASGRLRWEQL 403
+YG+ P D D+ LT A +G + G PD ++++L + G+L +
Sbjct: 365 QYGI--PEFTDVDDF-----LTKIAIKQGRLLKGGDPDIVAVSKVVLNEFQRGKLPYFVP 417
Query: 402 PPG--------YQPAPLEQLIEDRRNEKRKPTPMEARMVEGWRNKSEEID 277
PPG + AP+ ++ D ++++ P + + + RN + D
Sbjct: 418 PPGCEERAKKDFSQAPINEMCAD--DDEQLPLDAQLELDDVARNGGPDED 465
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 41.1 bits (92), Expect = 8e-04
Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
Frame = -1
Query: 762 QSLILDNDIELLDCPGLVLPAYAVAPDLLLTAVLPIDQMRSHDAAMARLCQLVSKFTFEQ 583
Q ++L I L+D PG+V P ++L V+ ++ ++ + + + +
Sbjct: 364 QYVMLMRRIYLIDSPGVVYPQGDSETQIILKGVVRVENVKDPENHVQGVLDRCKPEHLRR 423
Query: 582 KYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRSARLLLKDAASGRLRWEQL 403
+YG+ P D D+ LT A +G + G PD ++++L + G+L +
Sbjct: 424 QYGI--PEFTDVDDF-----LTKIAIKQGRLLKGGDPDIVAVSKVVLNEFQRGKLPYFVP 476
Query: 402 PPG--------YQPAPLEQLIEDRRNEKRKPTPMEARMVEGWRNKSEEID 277
PPG + AP+ ++ D ++++ P + + + RN + D
Sbjct: 477 PPGCEERAKKDFSQAPINEMCAD--DDEQLPLDAQLELDDVARNGGPDED 524
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 37.1 bits (82), Expect = 0.014
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = -1
Query: 375 EQLIEDRRNEKRKPTPMEARMVEGWRNKSEEIDSAFFAMKKSTAHVKGKPIIGVTGAQSA 196
E+L EDRR EK++ E R V RN SE+ S ++S K K + +
Sbjct: 252 EELKEDRRKEKKR----EMRAV---RNVSEDDSSTSSESEESDFEQKKKKKVKKSKKSKK 304
Query: 195 ERQVTKPWKQEKKHANKNKREKLRR 121
+++ K K++ K ANK K E+ R
Sbjct: 305 DKKKEKKEKKKSKKANKEKEERRAR 329
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 174 WKQEKKHANKNKREKLRRVYAH--LDEH*IASVIHVFILVSPMYFFN*CN 31
W QE H N++ EKL + H + + V+H F L +F N CN
Sbjct: 663 WLQELNHINQSSPEKLVELIIHRLMRYLYMYKVVHQFSLAYEKHFKNYCN 712
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 174 WKQEKKHANKNKREKLRRVYAH--LDEH*IASVIHVFILVSPMYFFN*CN 31
W QE H N++ EKL + H + + V+H F L +F N CN
Sbjct: 657 WLQELNHINQSSPEKLVELIIHRLMRYLYMYKVVHQFSLAYEKHFKNYCN 706
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 174 WKQEKKHANKNKREKLRRVYAH--LDEH*IASVIHVFILVSPMYFFN*CN 31
W QE H N++ EKL + H + + V+H F L +F N CN
Sbjct: 663 WLQELNHINQSSPEKLVELIIHRLMRYLYMYKVVHQFSLAYEKHFKNYCN 712
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 174 WKQEKKHANKNKREKLRRVYAH--LDEH*IASVIHVFILVSPMYFFN*CN 31
W QE H N++ EKL + H + + V+H F L +F N CN
Sbjct: 657 WLQELNHINQSSPEKLVELIIHRLMRYLYMYKVVHQFSLAYEKHFKNYCN 706
>AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical
protein Y111B2A.4 protein.
Length = 459
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = -1
Query: 384 APLEQLIEDRRNE-KRKPTPMEARMVEGWRNKSEEIDSAFFAMKKSTAHVKG----KPII 220
A +++ R +E K+ T ME GW + +ID +KK +H K K
Sbjct: 88 AKFNGMVKQRDDEIKKLKTQMEQLQESGWNESTSDIDQ-ICELKKQVSHWKSLAEEKSGD 146
Query: 219 GVTGAQSAERQVTKPWKQEKKHANKNKREKLRRVYAHLDEH 97
G G + E ++ K + EK+ +++K + + ++ H
Sbjct: 147 GGGGGEKEEEEMIKLSELEKR-IEALRQQKEHEIQSLVESH 186
>AF039716-5|AAB96740.1| 488|Caenorhabditis elegans Hypothetical
protein W03G9.5 protein.
Length = 488
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -1
Query: 306 GWRNKSEEIDSAFFAMKKSTAHVKGKPIIGVTGAQSAERQVTKPWKQEKKHANKNKREKL 127
G+ K E + A +++ VK + I A E Q+ K WK++++ ANK K K
Sbjct: 376 GFLGKQEAKPATPSARSETSKKVKRRYIARTPSAHKIE-QIEKNWKKKEEEANKEKLLKN 434
Query: 126 RR 121
R
Sbjct: 435 AR 436
>Z81077-4|CAB03071.3| 618|Caenorhabditis elegans Hypothetical
protein F36A2.4 protein.
Length = 618
Score = 29.1 bits (62), Expect = 3.7
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = -1
Query: 645 RSHDAAMARL-CQLVSKFTFEQKYGLLLPRTDDADELDYKQILTAHAY-NRGFMTAAGQP 472
R AAMA L QL F K L R + + ++ +H N FM A P
Sbjct: 332 RRRRAAMASLLAQLAKGMIFAHKDYNELARKKSKRKKEKRR--GSHVLPNEKFMFARLPP 389
Query: 471 DRSRSARLLLKDAASGRLRWEQLPPGYQPAP-LEQLIEDRRNEKRKPTPMEARMVEGWRN 295
D +++ A S RL W P + P P L I R E R ++G
Sbjct: 390 DPPSDCQVVSTSAYSVRLAW---APPFSPDPDLTYNIRYRLKHNEDAKVRELRGIKGNTV 446
Query: 294 KSEEIDSAFFAMKKSTAHVK 235
+ +DS + TAH K
Sbjct: 447 EIMSVDSCSLYEFRITAHNK 466
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 267 FAMKKSTAHVKGKPIIGVTGAQSAERQVTKPWKQEKKHANKNKREKLRR 121
+AM K K P + G + AER+ K W++E+K K + EK RR
Sbjct: 263 YAMNKEAR--KKLPAWILEGLEKAEREKQKQWEKEEK-LKKAEEEKARR 308
>AF078789-1|AAK21515.1| 392|Caenorhabditis elegans Hypothetical
protein Y44E3B.2 protein.
Length = 392
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 202 LSTGNSDNRFSFNVR--CTFLHSEESAVYLFRLVSPTLDHP 318
LS G +DN + + R CT + + + YLF + P +HP
Sbjct: 295 LSNGYTDNMYEYYPRPTCTRENPDCDSPYLFCYIPPNNEHP 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,110
Number of Sequences: 27780
Number of extensions: 304257
Number of successful extensions: 1358
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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