Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k19
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa... 77 2e-15
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 29 1.1
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 28 1.5
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 1.9
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 27 2.6
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 27 2.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 3.4
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 27 3.4
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 3.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 5.9
>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
Psf2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/111 (32%), Positives = 69/111 (62%)
Frame = -2
Query: 511 VIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKD 332
++PP+WM++ LENI+++E + F+++P ++ A L+L A+D+ + +I+ I+ D
Sbjct: 70 IVPPEWMEIGKLENIRDDELENETFSELP-FRWLETAHLLLNFCADDIEDVEDIRRILLD 128
Query: 331 IWDIRMSKLRTSMDALMKTGGGYGRLDHLTMMEINSVKPLLPAAMDNLLRM 179
I + R SK RT ++A+ + LD+L MEIN ++P+ MD + ++
Sbjct: 129 IREARQSKARTGLEAINEV---QLTLDNLGAMEINEIRPIFREVMDRMRKI 176
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = -2
Query: 517 CHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYM----VEAKLILGSAAEDVPNAPEI 350
C +P D E+ E + E+ F+TK +E+Y+ +A LIL S E + ++ +
Sbjct: 30 CSSLPSD--ATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILILKSGLETLKDSESL 87
Query: 349 KTIIKDIWDIRMSKLRTSM 293
+ +I I +S R +M
Sbjct: 88 CILNANIAAIYLSMAREAM 106
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -2
Query: 382 AAEDVPNAPEIKTIIKDIWDIRMSKL 305
+A DVP+A + +++KD+ D+ MSKL
Sbjct: 368 SATDVPSAEHVDSVLKDV-DVIMSKL 392
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 395 DTWFSCRRCSQCTRNKDYYQRHLGYKNV*VTNINGCIDENWR 270
+TW S RC+ C D LG+K + N CI ++
Sbjct: 340 NTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSIYK 381
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 517 CHVIPPDWMDVEVLENIKEEEKRSRFFT 434
C +P DW+ E + +KE++K + F+
Sbjct: 221 CSFVPKDWVRDEFFDTLKEKKKSCKGFS 248
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 217 VSLSLFPSLLNDLICHSHLQFSSMHPLMFVT*TFLYPRCL 336
+SL LF S LN + H F S+H L +T F+Y L
Sbjct: 520 ISLILFVSFLNRRLI-LHYSFESVHQLKTLTRKFIYSSLL 558
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 370 VPNAPEIKTIIKDIWDIRMSKLRT 299
+PN PE+K I ++W+ + KL T
Sbjct: 3749 MPNQPEVKQYIPNVWNDVLKKLIT 3772
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 27.1 bits (57), Expect = 3.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 308 VTNINGCIDENWRWLWQIR 252
+TN CID+ W +W +R
Sbjct: 81 ITNFGDCIDDEWYIVWLLR 99
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 512 MALLFLYHVFIYHIFLGILYYDLVTKTFKSCLIL-IYTLI 628
++LL F Y +F I Y L+ T+K CL+ I TL+
Sbjct: 41 VSLLVWNFYFGYRVFYRISKYSLIDLTYKLCLLCGIVTLL 80
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = +2
Query: 395 QFGFHHIVFIWHLCEESGTLFLFFNILQNFHVHPVRRDNMALLFLYHVFIYHIFLGILYY 574
+F H F++ E + L + + + + D + +LF +H ++ + ++
Sbjct: 562 RFKEDHFSFMFKKEENYAIITLSLVKIASTPMSKLYEDYLVMLFAFHYSMFQVMTKLIAD 621
Query: 575 DLVTKTFKSC 604
+LV +F+SC
Sbjct: 622 NLVHFSFQSC 631
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,759
Number of Sequences: 5004
Number of extensions: 66091
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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