Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k19
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1033 - 8178974-8178982,8179123-8179215,8179311-8179341,817...    41   0.001
06_03_0532 - 21844213-21844252,21844579-21844836,21845303-218455...    29   3.6  
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783...    29   6.2  

>01_01_1033 -
           8178974-8178982,8179123-8179215,8179311-8179341,
           8179434-8179519,8179572-8179624,8180026-8180140,
           8180505-8180579,8180683-8180730
          Length = 169

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
 Frame = -2

Query: 520 KCHVIPPDWMDVE--------------VLENIKEEEKRSRFFTKMPNEHYMVEAKLILGS 383
           KC +  PDWM V+              +   +  E +  + F  +P  HY+  +KL+   
Sbjct: 68  KCTIRTPDWMTVDSDCLIAYLSVLLLYIFMVLDAERESPKEFQPLPF-HYIEISKLLFDH 126

Query: 382 AAEDVPNAPEIKTIIKDIWDIRMSKLRTSMDAL 284
           A +D+ +A  ++++I+DI D+R  K+ T ++ +
Sbjct: 127 ARDDISDAYLVRSLIEDIRDVRFHKVETGLETI 159


>06_03_0532 -
           21844213-21844252,21844579-21844836,21845303-21845568,
           21845963-21846369,21846528-21847143
          Length = 528

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 316 MSKLRTSMDALMKTGGGYGRLDHLTMMEINSVKPLLPAAMDNLLRMQM 173
           MSK+ T  DA  K    +G + H T   +   +P  PA +  L+R+ +
Sbjct: 43  MSKIHTDHDATTKASSDFGHIVHATPNGV--FRPTFPADIAALIRLSL 88


>06_01_1006 +
           7836366-7836460,7836568-7836626,7836877-7836961,
           7837349-7837496,7837774-7837986,7838403-7838537,
           7838659-7838790,7838884-7839099,7839212-7839336,
           7839787-7839844,7839977-7840087
          Length = 458

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = -2

Query: 418 HYMVE-AKLILGSAAEDVPNAPEIKTIIKDIWDIRMSKLRTSMDALMKTGGGYGRLDHLT 242
           H ++E  +LI GSA + + +A E+  I+K++W  R ++ +   D   K    +  ++ L 
Sbjct: 344 HRLLEHEELIYGSAEQVLVDAEEVMYIVKELWRGRSARDQNLKDTGRKM---WRSVNELM 400

Query: 241 MMEINSVKPLLPAAMDNLLRMQMKTKKTAPSLNL 140
           ++  +  K   PA + NL+ ++        S  L
Sbjct: 401 LVRWDKSK---PAGVSNLILLKFNEADAHESTTL 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,155,819
Number of Sequences: 37544
Number of extensions: 389956
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)