Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k19
         (854 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071234-1|AAL48856.1|  215|Drosophila melanogaster RE26983p pro...   163   2e-40
AE014134-728|AAF51021.2|  215|Drosophila melanogaster CG18013-PA...   163   2e-40
AY094880-1|AAM11233.1|  506|Drosophila melanogaster RE49866p pro...    32   0.87 
BT016115-1|AAV37000.1|  352|Drosophila melanogaster LD09680p pro...    31   2.0  
AE014298-2665|AAN09457.1|  352|Drosophila melanogaster CG7192-PB...    31   2.0  
AE014298-2664|AAF48799.2|  352|Drosophila melanogaster CG7192-PA...    31   2.0  
BT021474-1|AAX33622.1|  300|Drosophila melanogaster AT06169p pro...    30   4.7  
AY119072-1|AAM50932.1|  747|Drosophila melanogaster LP08967p pro...    29   6.2  
AE014134-2282|AAF53246.1|  747|Drosophila melanogaster CG5204-PA...    29   6.2  
AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro...    29   8.1  
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC...    29   8.1  

>AY071234-1|AAL48856.1|  215|Drosophila melanogaster RE26983p
           protein.
          Length = 215

 Score =  163 bits (397), Expect = 2e-40
 Identities = 69/116 (59%), Positives = 98/116 (84%)
 Frame = -2

Query: 523 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 344
           QKC ++PP+WMD+++LE IKEEEKRS+FFTKMP EHYMV A+L++ +A +DVP   E++T
Sbjct: 68  QKCRIVPPEWMDMDILEEIKEEEKRSKFFTKMPCEHYMVVAQLVMSTAPDDVPRCEELRT 127

Query: 343 IIKDIWDIRMSKLRTSMDALMKTGGGYGRLDHLTMMEINSVKPLLPAAMDNLLRMQ 176
           +IKDI+DIR SKLRTS+DA +K  G Y +LD+LT++EI+SV+P+LP ++D++ R Q
Sbjct: 128 VIKDIFDIRESKLRTSIDAFIKGEGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQ 183


>AE014134-728|AAF51021.2|  215|Drosophila melanogaster CG18013-PA
           protein.
          Length = 215

 Score =  163 bits (397), Expect = 2e-40
 Identities = 69/116 (59%), Positives = 98/116 (84%)
 Frame = -2

Query: 523 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 344
           QKC ++PP+WMD+++LE IKEEEKRS+FFTKMP EHYMV A+L++ +A +DVP   E++T
Sbjct: 68  QKCRIVPPEWMDMDILEEIKEEEKRSKFFTKMPCEHYMVVAQLVMSTAPDDVPRCEELRT 127

Query: 343 IIKDIWDIRMSKLRTSMDALMKTGGGYGRLDHLTMMEINSVKPLLPAAMDNLLRMQ 176
           +IKDI+DIR SKLRTS+DA +K  G Y +LD+LT++EI+SV+P+LP ++D++ R Q
Sbjct: 128 VIKDIFDIRESKLRTSIDAFIKGEGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQ 183


>AY094880-1|AAM11233.1|  506|Drosophila melanogaster RE49866p
           protein.
          Length = 506

 Score = 32.3 bits (70), Expect = 0.87
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = -2

Query: 376 EDVPNAPEIKTIIKDIWDIRMSKLRTSMDALMKTGGGYGRLDHLTM------MEINSVKP 215
           ED   AP I T  +D     +  LRT  D +   GGG  +   L M      M  NS KP
Sbjct: 2   EDAVEAPFISTSSEDNTTCSVQDLRTGTDLMRYKGGGCAQHHSLNMIHLNYVMAANSAKP 61

Query: 214 LL 209
           LL
Sbjct: 62  LL 63


>BT016115-1|AAV37000.1|  352|Drosophila melanogaster LD09680p
           protein.
          Length = 352

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 439 FTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDI-WDIRMSK 308
           +T++    ++++ +L    A  D+P  PEI T++K + +D ++ +
Sbjct: 291 YTELEGVPFVMDVRLQRNQAVNDIPTLPEISTLLKSLDYDFQLER 335


>AE014298-2665|AAN09457.1|  352|Drosophila melanogaster CG7192-PB,
           isoform B protein.
          Length = 352

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 439 FTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDI-WDIRMSK 308
           +T++    ++++ +L    A  D+P  PEI T++K + +D ++ +
Sbjct: 291 YTELEGVPFVMDVRLQRNQAVNDIPTLPEISTLLKSLDYDFQLER 335


>AE014298-2664|AAF48799.2|  352|Drosophila melanogaster CG7192-PA,
           isoform A protein.
          Length = 352

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 439 FTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDI-WDIRMSK 308
           +T++    ++++ +L    A  D+P  PEI T++K + +D ++ +
Sbjct: 291 YTELEGVPFVMDVRLQRNQAVNDIPTLPEISTLLKSLDYDFQLER 335


>BT021474-1|AAX33622.1|  300|Drosophila melanogaster AT06169p
           protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -1

Query: 305 TNINGCIDENWRWLWQIRSFNNDGNKLSETSSTC--CYGQPLKDANENEKDSTIAQFK*F 132
           TN+  C       +   + +N+  N LS++  T   C+G+ LK   + ++  T+  F   
Sbjct: 187 TNMKFCFASKAPLICNKQDYNDLVNALSKSRKTLLKCHGELLKYTQKVDEALTLKNFDTM 246

Query: 131 NLQSIRELS 105
            L SI ELS
Sbjct: 247 ELPSISELS 255


>AY119072-1|AAM50932.1|  747|Drosophila melanogaster LP08967p
           protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -1

Query: 386 FSCRRCSQCTRNKDYYQRHLGYKNV*VTNINGCIDENWRWLWQI-RSFNNDGNKLSETSS 210
           F C++CS  T  +  +++H+ Y ++ +   + C D +  + W + R   N G       S
Sbjct: 321 FQCQKCSYSTPIRARFKKHVKYHSMPLIKCSSC-DFHTPYKWNLDRHTKNHGANGHFKCS 379

Query: 209 TCCYGQPLKDA 177
            C +   +K +
Sbjct: 380 CCDFSTDIKQS 390


>AE014134-2282|AAF53246.1|  747|Drosophila melanogaster CG5204-PA
           protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -1

Query: 386 FSCRRCSQCTRNKDYYQRHLGYKNV*VTNINGCIDENWRWLWQI-RSFNNDGNKLSETSS 210
           F C++CS  T  +  +++H+ Y ++ +   + C D +  + W + R   N G       S
Sbjct: 321 FQCQKCSYSTPIRARFKKHVKYHSMPLIKCSSC-DFHTPYKWNLDRHTKNHGANGHFKCS 379

Query: 209 TCCYGQPLKDA 177
            C +   +K +
Sbjct: 380 CCDFSTDIKQS 390


>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
          Length = 16215

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = -2

Query: 478   LENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWDIRMSK 308
             ++ + EE K ++    +  E    E K+ +    E++P  PE++ II++I +I   K
Sbjct: 13976 VQEVTEEAKITKSKKPVKEEEAAAELKVTI---TEEIPTEPEVQEIIEEIEEIEEEK 14029


>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
             isoform C protein.
          Length = 18074

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = -2

Query: 478   LENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWDIRMSK 308
             ++ + EE K ++    +  E    E K+ +    E++P  PE++ II++I +I   K
Sbjct: 15835 VQEVTEEAKITKSKKPVKEEEAAAELKVTI---TEEIPTEPEVQEIIEEIEEIEEEK 15888


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,590,273
Number of Sequences: 53049
Number of extensions: 663092
Number of successful extensions: 1663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1663
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)