Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k19
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92784-4|CAB07195.1|  180|Caenorhabditis elegans Hypothetical pr...    67   2e-11
Z81116-10|CAB03307.1|  321|Caenorhabditis elegans Hypothetical p...    30   1.8  
CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical ...    29   4.2  
AL132948-7|CAD31810.1|  426|Caenorhabditis elegans Hypothetical ...    28   7.4  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>Z92784-4|CAB07195.1|  180|Caenorhabditis elegans Hypothetical
           protein F31C3.5 protein.
          Length = 180

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 33/106 (31%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
 Frame = -2

Query: 517 CHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTII 338
           C V+ P WMDV+ L+ I   E  S+   K+P +H+   + +++  A ED+     +K+++
Sbjct: 59  CKVVAPQWMDVDELKKILTSETESQGLAKLP-DHFFEISHMLVRDAREDIFEVEAVKSLV 117

Query: 337 KDIWDIRMSKLRTS-MDALMKTGGGYGRLDHLTMMEINSVKPLLPA 203
           +DI+D R +KLR+S ++ L +    + +LD++ ++E +S +  L A
Sbjct: 118 QDIYDRRDAKLRSSAIEFLRQNQTCHAQLDNVQLIEASSARATLEA 163


>Z81116-10|CAB03307.1|  321|Caenorhabditis elegans Hypothetical
           protein T06C12.11 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 452 LFLFFNILQNFHVHPVRRDNMALLFLYHVFIYHIFLGILYYDL 580
           +F +  I Q  H+H +    +ALLFLY   I   +  + Y+ L
Sbjct: 108 MFRYIVICQQKHLHLIEGKRLALLFLYPFAISITWFSVCYFGL 150


>CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical
           protein C42C1.8 protein.
          Length = 544

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 321 ISQMSLIIVFISGALGTSSAAEPSISLASTI*CSF 425
           +  MSLI+ FISGA G    A   + L   I C++
Sbjct: 384 VPNMSLILFFISGAFGFCGLAAYPVGLELAIECTY 418


>AL132948-7|CAD31810.1|  426|Caenorhabditis elegans Hypothetical
           protein Y39B6A.8 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -2

Query: 409 VEAKLILGSAAEDVPNAPEIKTIIKDIWDIRMSKLRTSMDALMKTGGGYGRLDHLTMMEI 230
           ++  L+L S  ED    P + + I +I +  + +   S+++L K+G    +L+       
Sbjct: 288 IDENLLLTSTMEDGATVPTVTSNILEILEDALEEGSGSLESLEKSGNSGEKLEENRKNRR 347

Query: 229 NSVKPL 212
            SVK L
Sbjct: 348 KSVKSL 353


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 389 KYQFGFHHIVFIWHLCEESGTLFLFFNILQNFHVHPV---RRDNMALLFLYHVFIYHIFL 559
           K+ +G + + +I      S  LFL+  + +NF  +P     ++ +++ FL    +  +F 
Sbjct: 527 KFSYGIYLLNWITLAVSTSTMLFLYIYLRKNFQGYPAMVSHQNRLSVAFLLQALLTFVFC 586

Query: 560 G 562
           G
Sbjct: 587 G 587


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,716,505
Number of Sequences: 27780
Number of extensions: 356866
Number of successful extensions: 927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)