Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k14
         (875 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   471   e-133
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   471   e-133
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   471   e-133
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   471   e-133
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   471   e-133

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  471 bits (1162), Expect = e-133
 Identities = 216/270 (80%), Positives = 239/270 (88%)
 Frame = -1

Query: 842 KPVRNGQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIE 663
           K  +   D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IE
Sbjct: 143 KASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIE 202

Query: 662 DKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKV 483
           DKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKV
Sbjct: 203 DKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKV 262

Query: 482 ACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 303
           ACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++
Sbjct: 263 ACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTD 322

Query: 302 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 123
           KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTS
Sbjct: 323 KSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTS 382

Query: 122 SKFGHGRFQTPADKAAFMGTLKKDRIREES 33
           SK GHGRFQTPADK AFMG LKKDR++EE+
Sbjct: 383 SKMGHGRFQTPADKLAFMGPLKKDRLKEEA 412


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  471 bits (1162), Expect = e-133
 Identities = 216/270 (80%), Positives = 239/270 (88%)
 Frame = -1

Query: 842 KPVRNGQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIE 663
           K  +   D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IE
Sbjct: 132 KASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIE 191

Query: 662 DKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKV 483
           DKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKV
Sbjct: 192 DKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKV 251

Query: 482 ACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 303
           ACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++
Sbjct: 252 ACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTD 311

Query: 302 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 123
           KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTS
Sbjct: 312 KSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTS 371

Query: 122 SKFGHGRFQTPADKAAFMGTLKKDRIREES 33
           SK GHGRFQTPADK AFMG LKKDR++EE+
Sbjct: 372 SKMGHGRFQTPADKLAFMGPLKKDRLKEEA 401


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  471 bits (1162), Expect = e-133
 Identities = 216/270 (80%), Positives = 239/270 (88%)
 Frame = -1

Query: 842 KPVRNGQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIE 663
           K  +   D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IE
Sbjct: 119 KASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIE 178

Query: 662 DKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKV 483
           DKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKV
Sbjct: 179 DKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKV 238

Query: 482 ACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 303
           ACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++
Sbjct: 239 ACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTD 298

Query: 302 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 123
           KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTS
Sbjct: 299 KSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTS 358

Query: 122 SKFGHGRFQTPADKAAFMGTLKKDRIREES 33
           SK GHGRFQTPADK AFMG LKKDR++EE+
Sbjct: 359 SKMGHGRFQTPADKLAFMGPLKKDRLKEEA 388


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  471 bits (1162), Expect = e-133
 Identities = 216/270 (80%), Positives = 239/270 (88%)
 Frame = -1

Query: 842 KPVRNGQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIE 663
           K  +   D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IE
Sbjct: 119 KASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIE 178

Query: 662 DKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKV 483
           DKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKV
Sbjct: 179 DKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKV 238

Query: 482 ACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 303
           ACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++
Sbjct: 239 ACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTD 298

Query: 302 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 123
           KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTS
Sbjct: 299 KSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTS 358

Query: 122 SKFGHGRFQTPADKAAFMGTLKKDRIREES 33
           SK GHGRFQTPADK AFMG LKKDR++EE+
Sbjct: 359 SKMGHGRFQTPADKLAFMGPLKKDRLKEEA 388


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  471 bits (1162), Expect = e-133
 Identities = 216/270 (80%), Positives = 239/270 (88%)
 Frame = -1

Query: 842 KPVRNGQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIE 663
           K  +   D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IE
Sbjct: 132 KASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIE 191

Query: 662 DKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKV 483
           DKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKV
Sbjct: 192 DKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKV 251

Query: 482 ACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 303
           ACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++
Sbjct: 252 ACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTD 311

Query: 302 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 123
           KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTS
Sbjct: 312 KSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTS 371

Query: 122 SKFGHGRFQTPADKAAFMGTLKKDRIREES 33
           SK GHGRFQTPADK AFMG LKKDR++EE+
Sbjct: 372 SKMGHGRFQTPADKLAFMGPLKKDRLKEEA 401


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,289,950
Number of Sequences: 53049
Number of extensions: 878000
Number of successful extensions: 2363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2363
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)